Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00572 ATGAATTCCGATTCAGACTCAGATTCAGATGCTTCTCACATCTCCGCCACTCCTCCCAGAGATTCAAATCCGCCGCCGCCGCCGCTGCCGTCGTCTTCTTCAGTTACTCCGTTCACGTCAGCTTCCAATGCTAAGTGTAAGTTCAGTAAAGCCACTTCTTCTCTGGCGCGTACCAGGTCGAAACCTGGAAAGCACTCTTCCAGAGTTGCTAAGCCGTCTCCACCGCCTGATACGAAACCCTCCGAGGAAGAATCGCTTCCCGACTGGACTCCCCTTCCAACTCTGCCATATCAAATCCGTCGGGCTTCGGATCAGAGTCGTGGAGTTTCGTCCTCTGAATCTATCGAGATGCTTCCAGCCGGGTTCTTTTCAAAATCGTCATCGTTCTTGAAATTCCGTGGATCCTGTCTTAATTTTGAGACTTCCGAGGAAAATCGGTCTTTATCGGAGCCGAGCCAGCAGAACAATGCTGAGACTGAGGTCGCTAGTTCTTCAACGGCTGATTGGGGATCAAAAGATAATTTGTTTAGTCCCGGGAATCCGGTGAAACTCGTTAGGAAATATCCTAACTTGATTGGAGCCCACGTTCCTGCTCCGCCAGTCAAAGTGCGCAAATGTGGAGGTGAAGGCAACTTTGTGAAGCTTAACTTGAATGGTAGAAAGCGAAAATTTATTAAGAAATTCAACCGGAGAAAATATGGCGAGCGGAGTAGTTACCGGTCCCATAGAAGGACTAAGATGAACTCGAGAAATGAAGATTGCAACGAGACGGCTAGTTTCTGCGATGAAGATGGTTTGGTTACAGAAACAACGCAACATCCACAGAAGCAGGGCAATGGAGGAGCGAAATTTGATCCCGTTTCCATTGAAGAGACTATATCCAATGTGCGAAATGACCCATCTGATGATAACTTGGTAAAGTTGTTGAAATTAGCTTATGGGTATGATTCTTTCCAAGAAGGGCAGTTAGAGACTATCAAAATGGTGCTGGCCGGGAAATCAACGATGGTTGTTTTGCCCACCGGTGCCGGTAAATCAATTTGTTATCAAATACCGGCAATGGTTCTACCTGGGATAACCGTTGTTGTTAGTCCTTTGGTGGCATTAATGATAGATCAGATAAAACAATTGCCGCCTGTAATTCAGGGTGGTTTATTATGCAGCAGTCAGAGGCCTGATGAAGTATCTGAAATAGTGAGGCTGCTTATCCAAGGGTCGATGAAGGTGCTCTTTGTTTCACCTGAAAGGTTTCAGAACCCAGATTTTCTGTCAATGTTTTCTAGCGGCTTAGTGGTATCTCTTCTTGTGGTGGATGAAGCTCACTGTATATCTGAATGGCAAGTTGATTCCCAATTTGAACCGTCACACAATTTTCGACCTTCATATATGAGGCTTAGAGCATCTCTACTTCGAGCTCAACTCAACATTAACTGCATTCTTGCAATGACCGCAACGGCAACTACTTCAACTATGCAAGCAATTATGACTGCGTTAGAAATTCCTTCAGATAATCTCATTCTGAAGACTACAGTAAGGACAAATCTACAATTAGTGAAAGATCTACTTAAGCTAATCAAGTCTTCTCCCATAGCTGAAGTTCGGAGCATTATTATCTACTGCAAGTTTCAGTTGGAAACTGACTCGGTAAGCAGATACTTGTGTGATAATGGCATCTCTGCAAAGAGTTATCACAGTGGTCTTCCTGCTAAAGATCGCAAACACATACAGGACAATTTTTGTTCAAACAAGATTAGAGTGGTTGTTGCTACTGTGGCTTTTGGCATGGGACTTAACAAGAGGGACGTTGGCGCTGTAATCCATTATAGCATGCCGGAAAGCTTGGAGGAATATATTCAAGAGATAGGGCGTGCAGGCCGTGATGGTAGATTATCCTACTGTCATCTATTTCTTGACAATGACACATATTTCAAGCTTCGAAGTCTTATGCACAGTGATGGAGTTGATGAATACAATATAAACAAATTCATCAGTGAAGTGTTCTCTGAAAATAAGTGTGGAAAAGTGTATTCAATGGTCAAAGATCCTGCATCTCGTAAATTTGATATGAAGGAAGAGGTGATGATTACAATTCTAACATACTTGGAGCTCGGAGAAATGCAATATTTGCGCTTACTTCCTCAGTTAAATGTGACTTGCACTTTGAATTTTCATAAGACTTCACCAGCGATGCTTGCTGACAAAGATATCATTGTTGCTGAAATTTTGAAGAAGTCTGAAACTAAGCAAGGGCAGCATGTTTTTGACATGCTCACGGTGGTCAATAGCATTGGGATTTCAGCTACCAGTCTCTCAAATCATTTGCAAAATCTCAAGTTGAAGGGAGAAATCACATACGAAATGAAGGATCTGGCGTACTGTTATACAATTTTGAAATATCCTGAAGATTTTTGTTCTCTGTCAGCGCATCTTAGAAAATGGTTAGCCGAGATTCAGACTAGTAAGGTCTTTTTGCAGAGCAACTCACAGGCTAAGTTCACTCCCAGGGCCGTTGCAAGGATTATGCATGGCATTTCGAGCCCCGCTTATCCTTCAACAATATGGTCAAGAACTCATTTCTGGGGAAGGTATACACAGGTCGATTTCTCGGTAATAATGGAAGCAGCTACGTTAGAGCTCTTAAATTTTGTCGGGAAGGACGTCGTGTCCTAG 2670 43.18 MNSDSDSDSDASHISATPPRDSNPPPPPLPSSSSVTPFTSASNAKCKFSKATSSLARTRSKPGKHSSRVAKPSPPPDTKPSEEESLPDWTPLPTLPYQIRRASDQSRGVSSSESIEMLPAGFFSKSSSFLKFRGSCLNFETSEENRSLSEPSQQNNAETEVASSSTADWGSKDNLFSPGNPVKLVRKYPNLIGAHVPAPPVKVRKCGGEGNFVKLNLNGRKRKFIKKFNRRKYGERSSYRSHRRTKMNSRNEDCNETASFCDEDGLVTETTQHPQKQGNGGAKFDPVSIEETISNVRNDPSDDNLVKLLKLAYGYDSFQEGQLETIKMVLAGKSTMVVLPTGAGKSICYQIPAMVLPGITVVVSPLVALMIDQIKQLPPVIQGGLLCSSQRPDEVSEIVRLLIQGSMKVLFVSPERFQNPDFLSMFSSGLVVSLLVVDEAHCISEWQVDSQFEPSHNFRPSYMRLRASLLRAQLNINCILAMTATATTSTMQAIMTALEIPSDNLILKTTVRTNLQLVKDLLKLIKSSPIAEVRSIIIYCKFQLETDSVSRYLCDNGISAKSYHSGLPAKDRKHIQDNFCSNKIRVVVATVAFGMGLNKRDVGAVIHYSMPESLEEYIQEIGRAGRDGRLSYCHLFLDNDTYFKLRSLMHSDGVDEYNINKFISEVFSENKCGKVYSMVKDPASRKFDMKEEVMITILTYLELGEMQYLRLLPQLNVTCTLNFHKTSPAMLADKDIIVAEILKKSETKQGQHVFDMLTVVNSIGISATSLSNHLQNLKLKGEITYEMKDLAYCYTILKYPEDFCSLSAHLRKWLAEIQTSKVFLQSNSQAKFTPRAVARIMHGISSPAYPSTIWSRTHFWGRYTQVDFSVIMEAATLELLNFVGKDVVS 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3951925 3960284 + Cp4.1LG09g06170.1 Cpe09g00572 474938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00572 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 647 IPR027417 -
Cpe09g00572 889 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 683 IPR001650 -
Cpe09g00572 889 MobiDBLite consensus disorder prediction 1 94 - -
Cpe09g00572 889 MobiDBLite consensus disorder prediction 143 173 - -
Cpe09g00572 889 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 504 IPR014001 -
Cpe09g00572 889 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 308 655 IPR004589 GO:0004386|GO:0006310
Cpe09g00572 889 Pfam Helicase conserved C-terminal domain 531 627 IPR001650 -
Cpe09g00572 889 MobiDBLite consensus disorder prediction 1 18 - -
Cpe09g00572 889 MobiDBLite consensus disorder prediction 34 60 - -
Cpe09g00572 889 MobiDBLite consensus disorder prediction 19 33 - -
Cpe09g00572 889 PANTHER DNA HELICASE RECQ FAMILY MEMBER 63 822 - -
Cpe09g00572 889 SMART ultradead3 314 518 IPR014001 -
Cpe09g00572 889 Gene3D - 288 503 IPR027417 -
Cpe09g00572 889 SMART helicmild6 547 628 IPR001650 -
Cpe09g00572 889 MobiDBLite consensus disorder prediction 143 175 - -
Cpe09g00572 889 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 433 442 IPR002464 -
Cpe09g00572 889 Pfam DEAD/DEAH box helicase 321 491 IPR011545 GO:0003676|GO:0005524
Cpe09g00572 889 Gene3D - 504 690 IPR027417 -
Cpe09g00572 889 PANTHER ATP-DEPENDENT DNA HELICASE Q4 63 822 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00572 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4] - csv:101220021 1280.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00572 Cpe-Chr9:3951925 Cpe15g00162 Cpe-Chr15:1342419 6.93E-52 dispersed
Cpe09g00572 Cpe-Chr9:3951925 Cpe08g00137 Cpe-Chr8:882415 6.90E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1156 . . . . . . . . . . . . . . . Cpe09g00572 . . . . . . . . . . . . . . . . . . . . . . . Blo06g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011110 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00572 Cpe_Chr09 FPKM 4.42 11.05566 2.01071 2.283575 1.474806 0.36832 0.0 15.409045 16.46611 15.583876