Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00573 ATTGGAAATTGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAGCTGTCCCATTCCCTCCGTCTTGCCTCCTTCACCAACTAACCATCTCTCCGCATAACATCAAATCTTCCCTCTTCCTCATTGATTTCGTTTCTCCAATCCCAGATTTTGAATTTTCTCTTCATAATCCCAACAATTTTTCGACTCCAACGCCCCGATCTTCCTTTTCCTCAACCATTCTCATGAATTTCCCCATCATTTCTGCTCTCGTTGCCTTCGCAATCGCCCAGTCCATCAAGTTCTTCACTACTTGGTATAAGGAAAGGCGATGGGATTTTAAGAGACTGATTGGATCTGGTGGAATGCCTTCATCTCATTCTTCAACTGTTTCTGCTCTTGCTGTAGCCATTGGCCTTCAAGAAGGCTTTGGAGCTTCAGCTTTTGCTGTTGCATTGATCTTAGCCTGTGTTGTAATGTACGATGCAACTGGTGTAAGATTACAAGCTGGACGCCAAGCAGAGGTTTTGAATCAAATTGTTTACGAGCTTCCTGCTGAACATCCTTTGGCTGAGAGCAGACCACTGCGAGAACTTCTTGGTCACACCCCTCCCCAGGTTGTAGCTGGAGGCTTACTTGGTATTATCACCTCTTCTATTGGCCATTTGATAATCATAATAACTAAGTCTTGA 687 41.48 IGNWKKKKKKKKKKKKKKXEAVPFPPSCLLHQLTISPHNIKSSLFLIDFVSPIPDFEFSLHNPNNFSTPTPRSSFSSTILMNFPIISALVAFAIAQSIKFFTTWYKERRWDFKRLIGSGGMPSSHSSTVSALAVAIGLQEGFGASAFAVALILACVVMYDATGVRLQAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHTPPQVVAGGLLGIITSSIGHLIIIITKS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3961304 3964171 + Cp4.1LG09g06180.1 Cpe09g00573 474939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00573 228 Pfam Divergent PAP2 family 82 214 IPR003832 -
Cpe09g00573 228 PANTHER PHOSPHATIDIC ACID PHOSPHATASE TYPE 2/HALOPEROXIDASE-RELATED 72 222 - -
Cpe09g00573 228 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 72 222 IPR003832 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00573 K09775 K09775; uncharacterized protein - csv:101208855 252.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00593 Cpe-Chr8:3907010 Cpe09g00573 Cpe-Chr9:3961304 4.74E-21 dispersed
Cpe09g00573 Cpe-Chr9:3961304 Cpe16g00424 Cpe-Chr16:5620490 7.50E-55 dispersed
Cpe05g01005 Cpe-Chr5:6569576 Cpe09g00573 Cpe-Chr9:3961304 4.11E-12 transposed
Cpe05g01020 Cpe-Chr5:6653297 Cpe09g00573 Cpe-Chr9:3961304 3.28E-09 transposed
Cpe14g00721 Cpe-Chr14:5042435 Cpe09g00573 Cpe-Chr9:3961304 1.15E-67 transposed
Cpe01g01602 Cpe-Chr1:9782378 Cpe09g00573 Cpe-Chr9:3961304 7.67E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1155 . . . . . Bpe10g00780 . . . . . . . . . Cpe09g00573 . Bhi07g01878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000740 5 3 3 4 4 2 3 2 3 2 2 2 2 2 2 3 2 7 5 3 2 3 3 2 2 2 2 9 4 3 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00573 Cpe_Chr09 FPKM 0.924198 1.310544 0.965793 0.596231 3.428023 3.754915 3.453277 1.213295 0.920323 0.75219