Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00575 ATGAGGCCAGTGGAGGATAAAGGCTGCTATAATCACGAGCCAATAAAACCGCACCGAGGTTCACATCATCGCACAGCGTTAGGAAAACCAACGCCATCGAAATGGGACGATGCGCAGAAATGGATTGTAGGATTTTCGAAAGGCGGAGAAAAAAATCAATCGAAAACCGCACCGAGAAACTCGAATGCAGACGATTTGAGGCTTATAGCTTATGTACCACAGAAAGAGCAGGATTACTCGAGCAACGACGAGGAAGAACAACAACAAAATGAGAATCAATTTGAATCAGAGACGAAGAATGTCGATTGTCGCGATTCAATTTTGCGAATCGAGAAACAGATTGAGAATCCAGCGGCGGCTGTTAGGTCAATATGCGTGAGGGATACGGGAACGGAGATGACTCCGATTGCTAGCCAAGAGCCTTCCAGAACGGCGACGCCGATTCGAGGCACGACGGCGTCGGCGACGGCGACGGCGATGGCGCGTAGCCCTATATCGTCTGGATCGTTGACTCCGGCGATGTTCGATCGGGCGAAGCAAGGTACTGAAAGGTTTCAGCCGAGGATTCAGGGCAATGATGTCGGAGTAGAATCGAACGCGATTCAGAGTGGTGAAGAATCAACTGGCGGAAGAGTTAGTGAGGAAAATCGGGACTCTGATCAAGCGAAGAAGATGAACTCGCTAGAAACTAGGGCAATGGCTTGGGACGAAGCGGAACGAGCCAAATACATGGCTAGATTTAAGCGGGAAGAAGTGAAGATAGAAGCGTGGGAAAACAAGGAGAAGCGAAAAGCGGAGACGGAGATGAGAAAAATAGAGGTGAAAGCGGAGAAAATGAAGAGTCGAGCGCAGGAGAAGATGGCGAAAAAGCTTGCGAGAGCGACGAGAATGGCGGAAGAGAGGCGAGCAAATGCAGAGGCGAAGCTGAACGAGAAAGCCGTAAAGACATGGGAGAAATCTGATTATGTAAAGAGGACTGGCCATTTGCCTTCTTCCTTCTCCTTCAAACTGCCTTCAATCTGCTGGTAG 1029 49.37 MRPVEDKGCYNHEPIKPHRGSHHRTALGKPTPSKWDDAQKWIVGFSKGGEKNQSKTAPRNSNADDLRLIAYVPQKEQDYSSNDEEEQQQNENQFESETKNVDCRDSILRIEKQIENPAAAVRSICVRDTGTEMTPIASQEPSRTATPIRGTTASATATAMARSPISSGSLTPAMFDRAKQGTERFQPRIQGNDVGVESNAIQSGEESTGGRVSEENRDSDQAKKMNSLETRAMAWDEAERAKYMARFKREEVKIEAWENKEKRKAETEMRKIEVKAEKMKSRAQEKMAKKLARATRMAEERRANAEAKLNEKAVKTWEKSDYVKRTGHLPSSFSFKLPSICW 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3973500 3976247 + Cp4.1LG09g06120.1 Cpe09g00575 474941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00575 342 Coils Coil 240 260 - -
Cpe09g00575 342 PANTHER OS02G0116800 PROTEIN 1 341 - -
Cpe09g00575 342 MobiDBLite consensus disorder prediction 1 99 - -
Cpe09g00575 342 MobiDBLite consensus disorder prediction 182 227 - -
Cpe09g00575 342 Coils Coil 262 308 - -
Cpe09g00575 342 MobiDBLite consensus disorder prediction 1 16 - -
Cpe09g00575 342 MobiDBLite consensus disorder prediction 210 225 - -
Cpe09g00575 342 Pfam Remorin, C-terminal region 228 331 IPR005516 -
Cpe09g00575 342 PANTHER F12A21.28 1 341 - -
Cpe09g00575 342 MobiDBLite consensus disorder prediction 192 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00575 - - - mcha:111019668 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00430 Cpe-Chr3:2425134 Cpe09g00575 Cpe-Chr9:3973500 1.51E-17 dispersed
Cpe08g01362 Cpe-Chr8:9791225 Cpe09g00575 Cpe-Chr9:3973500 5.00E-19 dispersed
Cpe09g00575 Cpe-Chr9:3973500 Cpe19g01156 Cpe-Chr19:7749521 4.59E-39 dispersed
Cpe01g01603 Cpe-Chr1:9786483 Cpe09g00575 Cpe-Chr9:3973500 1.67E-41 wgd
Cpe11g00060 Cpe-Chr11:320279 Cpe09g00575 Cpe-Chr9:3973500 1.32E-113 wgd
Cpe07g00051 Cpe-Chr7:238418 Cpe09g00575 Cpe-Chr9:3973500 3.26E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1153 . . . . . . . . . . . . . . . Cpe09g00575 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004328 2 2 1 1 1 0 4 0 0 1 0 0 3 1 1 3 0 2 3 0 1 2 2 2 2 1 2 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00575 Cpe_Chr09 FPKM 9.626751 10.864067 7.171856 7.610111 10.357208 9.734748 10.658168 8.80613 7.663753 8.532322