Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00576 ATGGCAGCGGGGAGGATGGGGGGTTATCGCGACTATGATATGAAGGACCGAGATTCCGGTTTTGATGTGAGTGCGAAGGAAGAGTATGAACGGGGACGGGGGCGTAACCGTGAAAGCAATAAGAGTCGAGGTTGGGAGGTTAGGGATAGAGTTAGGGTCAGGCCGAAGGAGATCAAGGACAGGGAATTAGGTAATGGTAGTGCACGTTCTTCAAGTAGAAGCGATTCTGGCAGCAGCGGTGGGCCTCATGGAATCAATCAAAGTGTTTTTCTTGTCAGGGCAATGGATAGGGAGCCGGGTGAGTTATCCAGTGAGAGTGGATCTGACGATGCCACCGATTCTGGATTACAATTTAAGAATAGCGAGGCACCAAAGGTGGCGGAGAATGGAATTCGTTCTCCACCTGAGAAGAAGAGGAAGTTCTCACCGATAGTTTGGGACAGAGACGTTAAGGAAGAGACTGTTTCCCTAAGACATAAGGTCGCCAAGGCTGTGACAGATTCATCTCTGCCGCTTCCTAAGGAGCAGCGGCAATCTCCTAATGTGGTATTGGATACTCTTGATGCCGTACCCACTGTCAGAACTATTGATCACGAGTATGTGCAACCTTCTTCACTTGCTGAATCTTCTGTTGCTCTTGGATCAGATGAATTTTCCGCTAGTGGTTCACCAATGATGCCATCTTCTGCTTCAATTAGGAAACCATTGGAGAGTGATCTTGAAGCAGAAAATCTTGGGGATGATGATTATGTCCCCACAAGAAACATTTCATCCTCTAGATGGGCTGCCGGAAATAACTCTCCCGGTGATGAAGGTGAAATTTTAGACAAGGAAATCCCTAAAAGGAGGAAGACAACACCAATTTCCGAGTCCTTGGAGGGCATTCGATTTCAAAGGAAATCATTAACTCCAGAGATTGGGGAGGTAATGAGACATGGCTCTGAAGCAGGGACAAGATCATCTGAATCGACAGAACATGGTGATCGGTCTCGATCATCTAGTGGGAATCATTACCTCGGTAATGATTTTGAGAAGTTCGAAGGCACAGAGCTAGGTGATGAAATTCATAGATCAGATACTAGCAGTAGCCGGTTAGATAATGATTCCGAGGATGAGACAGAATCTCCCGAGGAGGCAGAGCTCAGTGGCCCTCCCCCCCGAAATGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAAAGATTGAATAAGATTGATGAAGGAACTTACGGTGTTGTATATAGAGCCAGAGACAAAAAGTCAGGGGAAATAGTTGCGTTGAAGAAAGTAAAAATGGAAAAGGAGCGAGAAGGTTTTCCAATGACTTCTTTGAGAGAAATAAACATTCTCCTTTCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGCCTTGATAGCATTTTTATGGTAATGGAATACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTACAGTTATTGGAGGGTGTTAAATATCTTCATGATAATTGGGTGCTTCATAGGGACTTAAAAACATCAAATTTACTCTTGAATAATCAGGGAGAGTTGAAGATCTGTGATTTTGGATTAGCTCGACAGTATGGGAGCCCTTTGAAAACATATACGCATATGGTTGTTACTCTTTGGTACAGGGCACCTGAGCTTCTTTTGGGAACAAGACAGTATTCGACAGCCATTGATATGTGGTCATTGGGTTGTATTATGGCTGAATTATTATCAAAGCAACCACTGTTTAATGGGAAAACAGAAGTTGATCAACTTGACAAGATATTCCGAATGCTAGGCACACCAAATGAAACAATTTGGCCTGGATTTTCCAATCTTCCAGGAGTTCGGGTCAACTTTGTTAAGCACCAGTACAACTTACTGCGTAAGAAATTTCCTGCAACATCATTCACGGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTACTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCTGCTCTTAATCACGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGCATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTCCGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAGCGCAGAAAGGAGTTGCAGCAAGGAGAATTGGGAACATCTGGCTTGTTTGGCTGA 2244 43.94 MAAGRMGGYRDYDMKDRDSGFDVSAKEEYERGRGRNRESNKSRGWEVRDRVRVRPKEIKDRELGNGSARSSSRSDSGSSGGPHGINQSVFLVRAMDREPGELSSESGSDDATDSGLQFKNSEAPKVAENGIRSPPEKKRKFSPIVWDRDVKEETVSLRHKVAKAVTDSSLPLPKEQRQSPNVVLDTLDAVPTVRTIDHEYVQPSSLAESSVALGSDEFSASGSPMMPSSASIRKPLESDLEAENLGDDDYVPTRNISSSRWAAGNNSPGDEGEILDKEIPKRRKTTPISESLEGIRFQRKSLTPEIGEVMRHGSEAGTRSSESTEHGDRSRSSSGNHYLGNDFEKFEGTELGDEIHRSDTSSSRLDNDSEDETESPEEAELSGPPPRNVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRMLGTPNETIWPGFSNLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKAFMPTFPAQHAQDRRFRRVMKSPDPLEEQRRKELQQGELGTSGLFG 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3977814 3983685 + Cp4.1LG09g06140.1 Cpe09g00576 474942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00576 747 MobiDBLite consensus disorder prediction 318 332 - -
Cpe09g00576 747 Gene3D Transferase(Phosphotransferase) domain 1 484 722 - -
Cpe09g00576 747 Gene3D Phosphorylase Kinase; domain 1 387 483 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 251 265 - -
Cpe09g00576 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Cpe09g00576 747 MobiDBLite consensus disorder prediction 271 289 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 355 390 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 67 85 - -
Cpe09g00576 747 SMART serkin_6 401 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00576 747 ProSiteProfiles Protein kinase domain profile. 401 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00576 747 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 155 747 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 1 141 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 216 343 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 723 747 - -
Cpe09g00576 747 Pfam Protein kinase domain 401 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g00576 747 MobiDBLite consensus disorder prediction 105 119 - -
Cpe09g00576 747 PANTHER CELL DIVISION PROTEIN KINASE 155 747 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 355 369 - -
Cpe09g00576 747 MobiDBLite consensus disorder prediction 9 66 - -
Cpe09g00576 747 SUPERFAMILY Protein kinase-like (PK-like) 393 698 IPR011009 -
Cpe09g00576 747 CDD STKc_CDC2L1 395 692 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00576 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - csv:101209096 1263.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01385 Cpe-Chr4:11207918 Cpe09g00576 Cpe-Chr9:3977814 4.28E-78 dispersed
Cpe09g00576 Cpe-Chr9:3977814 Cpe16g00933 Cpe-Chr16:8608624 7.27E-88 dispersed
Cpe19g00180 Cpe-Chr19:1450012 Cpe09g00576 Cpe-Chr9:3977814 1.70E-65 dispersed
Cpe01g01604 Cpe-Chr1:9789478 Cpe09g00576 Cpe-Chr9:3977814 0 wgd
Cpe11g00061 Cpe-Chr11:324146 Cpe09g00576 Cpe-Chr9:3977814 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62602 PF00069 Pkinase 4.70E-76 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00576 Cpe_Chr09 FPKM 13.891687 14.276706 30.4284 33.169125 36.249763 33.279213 39.25359 17.462732 16.892927 18.319027