Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00577 ATGGGCATGACGAAGAACATCATGAAATTGAGTCCGAGAGAAGTGGAACAGCTAGGTCTACATAATGCGGGATTTCTAGCGCAGAAGCGTCTTGCTCGTGGCGTGAGATTGAATTACGCTGAAGCTGTAGCACTAATTTCCGCACAGATTTTGGAGTTTGTTCGTAATGGCGAGAAGAGCGTGGCGGATCTGATGGATTTGGGGAAAACACTGTTAGGAAGGTTTGTTGAAAATCTTTTTGATTCGTTATTCGTCTTGATTTCTGGTGTGATGAGATTTGATCCTGAAAACAGGAGATTAGTTCTTCCTGGTGTTCCGCATCTTTTGGATTACGCTCAGGTTGAAGGAACTTTTCCCGATGGGACTAAAGGATGGGAATCTGTGGAGCTAGCGTTGCAGGGCACTTTTCTTCCAGTTCCTTCGTTAGACAAGTTCCCTTCGTTGGAAAGTAGCACAGTGCCTGGCGAGATTATCTGTGTTGATGGTGAGATTGCAATCAATGTTGGGCGGAAAGCTGTAATACTCAAGATAAACAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCATTATCACTTTATTGAGACAAATCCTTCCTTGGTATTCGATCGATCTAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCAACACGATTCGAGCCAGGGGAGCAGAAATCTGCCACTCTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAATGGCATTGCTGATGGTCCAGTGGATGATTCCAAGTTGAAAGAAGTGATGGAAGCTGTGCATTCAAGAGGATTTGGAGATTTGGAAGAAAAAGATGCGAGAGTAGGTGTCACTGGAGACAAGGACGATGTATTCACGACGAGAGTTTCTCATGAGGATTATGCGAACCGGTATGGTCCTACTACCGGTGACAAAGTTCGACTCGGTGACACAGATTTATATGCTGAAATCGAACACGATTTCTCCCTTTATGGAGATGAATGTGTATTTGGCGGTGGAAAGGTTATTAGAGACGGAATGGGCCAATCATGTGGGCATCCACCGGCTTCATCTCTTGATACTGTAATAACCAATGCAGTGATCATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTTCCATTGGAAAATCTGGCAATCCTGATGTCATGGATGGAGTTCGTCCTAACATGATCATTGGGCTCAATACTGAGGTTATAGCTGGAGAAGGCTTGCTGGTTACTGCAGGAGCTATAGATTGTCATGTGCACTACATATGCCCTCAAATGGTACACGAAGCGATATCGAGCGGCATCACGACACTGGTCGGAGGTGGAACGGGGCCTGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGTGCAGATGAAGATGATGCTGCAATCCACTGATGAACTTCCCCTGAACTTTGGCTTTACAGGAAAAGTGAACATTCATACTGACACCTTGAATGATGAAGGAGCTGGAGGTGGACATGCTCCCGATATCATTAGAGTGTGTAGTGTGAAAAATGTACTACCGTCGTCAACTAATCCAACACGACCCTTCACGAGCAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTGGATCGCAACATTAAAGAAGATTTAGCTTTTGCTGAATCAAGGATAAGAGAGGAAACAATTGCTGCAGAGGATATTTTGCATGATATGGGAGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGATTTGTAGAACATGGCAAACTGCGCACAAAATGAAGCTGCAAAGAGGACCGCTTGATTCCAAGAAACCGGACAACGACAACCTTCGGATCAAGCGATACGTCTCGAAATATACAATAAATCCAGCCATAGCAAACGGGTTTTCTCAATATATTGGTTCAGTGGAGGTAGGTAAGTTGGCTGATCTTGTCCTGTGGAAGCCATCCTTTTTTGGGGCAAAACCAGAGAAGGTGATTAAAGGTGGTACAATTGCTTGGGCGAACATGGGCGATCCAAATGCAAGCATTCCTACACCCGAACCGATACTGATGAGGCCAATGTATGGATCAATTGGGAAGGCAGGAAGTGGGAACTCAATTGCCTTTGCGAGTCTTAACGCGGGAGTTAAGGCCATGTATGGTCTAAACAAGAGAGTTGAAGCTGTGGGGAACACAAGGATGTTGACAAAACTTGACATGCAATGGAATGATGCCCTTCCAAACATAACTGTGGATCCCGAAAACTACGACGTAATAGTAGACGGCGATGTTCTTACCTGCCCGCCCGTCTCGACCGTGCCACTTTCGACCAGCTACTTCCTTTTCTAG 2367 45.16 MGMTKNIMKLSPREVEQLGLHNAGFLAQKRLARGVRLNYAEAVALISAQILEFVRNGEKSVADLMDLGKTLLGRFVENLFDSLFVLISGVMRFDPENRRLVLPGVPHLLDYAQVEGTFPDGTKGWESVELALQGTFLPVPSLDKFPSLESSTVPGEIICVDGEIAINVGRKAVILKINNKGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGEQKSATLVAIGGNQVIRGGNGIADGPVDDSKLKEVMEAVHSRGFGDLEEKDARVGVTGDKDDVFTTRVSHEDYANRYGPTTGDKVRLGDTDLYAEIEHDFSLYGDECVFGGGKVIRDGMGQSCGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFISIGKSGNPDVMDGVRPNMIIGLNTEVIAGEGLLVTAGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPVQMKMMLQSTDELPLNFGFTGKVNIHTDTLNDEGAGGGHAPDIIRVCSVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDRNIKEDLAFAESRIREETIAAEDILHDMGAISIISSDSQAMGRIGEVICRTWQTAHKMKLQRGPLDSKKPDNDNLRIKRYVSKYTINPAIANGFSQYIGSVEVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPEPILMRPMYGSIGKAGSGNSIAFASLNAGVKAMYGLNKRVEAVGNTRMLTKLDMQWNDALPNITVDPENYDVIVDGDVLTCPPVSTVPLSTSYFLF 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3984607 3994306 - Cp4.1LG09g06100.1 Cpe09g00577 474943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00577 788 CDD Urease_alpha 292 787 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 Pfam Urease, gamma subunit 8 74 IPR002026 GO:0016151|GO:0043419
Cpe09g00577 788 Hamap Urease subunit alpha [ureC]. 291 788 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 SUPERFAMILY Urease, gamma-subunit 8 123 IPR036463 GO:0016151|GO:0043419
Cpe09g00577 788 CDD Urease_beta 153 252 IPR002019 GO:0035550|GO:0043419
Cpe09g00577 788 Pfam Amidohydrolase family 416 487 IPR006680 GO:0016787
Cpe09g00577 788 Pfam Amidohydrolase family 493 676 IPR006680 GO:0016787
Cpe09g00577 788 Gene3D - 489 670 - -
Cpe09g00577 788 ProSiteProfiles Urease domain profile. 494 788 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 CDD Urease_gamma 11 123 IPR002026 GO:0016151|GO:0043419
Cpe09g00577 788 SUPERFAMILY Composite domain of metallo-dependent hydrolases 292 468 IPR011059 GO:0016810
Cpe09g00577 788 TIGRFAM urease_beta: urease, beta subunit 153 253 IPR002019 GO:0035550|GO:0043419
Cpe09g00577 788 ProSitePatterns Urease nickel ligands signature. 418 431 IPR029754 GO:0016151
Cpe09g00577 788 Gene3D Urease, subunit C, domain 1 283 475 IPR011059 GO:0016810
Cpe09g00577 788 ProSitePatterns Urease active site. 541 557 IPR017950 GO:0009039
Cpe09g00577 788 Hamap Urease subunit beta [ureB]. 152 252 IPR002019 GO:0035550|GO:0043419
Cpe09g00577 788 PRINTS Urea amidohydrolase (urease) protein signature 519 536 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 PRINTS Urea amidohydrolase (urease) protein signature 625 640 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 PRINTS Urea amidohydrolase (urease) protein signature 651 664 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 PRINTS Urea amidohydrolase (urease) protein signature 558 574 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 SUPERFAMILY Metallo-dependent hydrolases 421 788 IPR032466 -
Cpe09g00577 788 Gene3D - 688 788 - -
Cpe09g00577 788 SUPERFAMILY Composite domain of metallo-dependent hydrolases 633 703 IPR011059 GO:0016810
Cpe09g00577 788 Pfam Urease subunit beta-alpha linker domain 252 283 IPR040881 -
Cpe09g00577 788 ProSiteProfiles Urease domain profile. 420 489 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 Pfam Urease beta subunit 154 250 IPR002019 GO:0035550|GO:0043419
Cpe09g00577 788 SUPERFAMILY Urease, beta-subunit 153 280 IPR036461 -
Cpe09g00577 788 Gene3D Urease, beta subunit 152 282 IPR036461 -
Cpe09g00577 788 PIRSF Urease 90 497 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 PIRSF Urease 8 92 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 PIRSF Urease 488 788 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cpe09g00577 788 PANTHER UREASE 493 788 - -
Cpe09g00577 788 PANTHER UREASE 8 490 - -
Cpe09g00577 788 Pfam Urease alpha-subunit, N-terminal domain 292 410 IPR011612 -
Cpe09g00577 788 Gene3D - 11 145 IPR036463 GO:0016151|GO:0043419
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00577 K01427 URE; urease [EC:3.5.1.5] - csv:101209590 1205.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01606 Cpe09g00577 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01606 Cpe-Chr1:9802155 Cpe09g00577 Cpe-Chr9:3984607 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00577 Cpe_Chr09 FPKM 4.44863 8.707162 8.381902 11.467825 10.363177 12.383949 9.35749 16.46154 19.418674 18.747856