Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00578 GGAGGCTTCATAAAAATCTTAACGCTATCACAGCGGGAATCTTTCAATCAGAATGGAGGGAAATGTAAAGGCGATAACGATAAGTTCGTTCGAAACCGAGTGATCGGAATCATCCCGTACAGCTACATGCGCACCAGAATGCATCGAATTCGATTCTTTGCGATAGCGATCTCTTTTATCATTACCACATTCTGCAGATTTTGGTTATGCGAACGCCGGAAAATTCCATTGCTCAGCATAGCTGGTGATGGAAGATGTTTGTTTCGATCAGTGGTTCACGGTGCTTGTCTCAGATCTGGCAAGCCAGCTCCAAACGAGGATCTCGAAAAAGAGCTTGCAGACGAGCTTAGAGAGAACGTTGCAAATGAGTTGATGAAGAGGCGATTGGACACCGAGCGAGAATATCCAAAGTGTGCACTGATTGGCAGGTTTATTGAAGGTGACTTTGGCCAGTATGTTAGATGCATGCGCCAACCACACGTTTGGGGAGGAGAACCTGAGTTACTTATGTCTTCACACGTCCTACGGATGCCAATCTCGGTCTACATTTGGGACATGAAGTCAGCAAATCTGAAGCTCATAGCTGAGTATGGGCAGGAGTACAGTAAAGAGAATCCTATTCGCGTCCTTTTTCACAGCTACGGGCATTATGATTTACTGAAGGCTCCATGA 672 45.68 GGFIKILTLSQRESFNQNGGKCKGDNDKFVRNRVIGIIPYSYMRTRMHRIRFFAIAISFIITTFCRFWLCERRKIPLLSIAGDGRCLFRSVVHGACLRSGKPAPNEDLEKELADELRENVANELMKRRLDTEREYPKCALIGRFIEGDFGQYVRCMRQPHVWGGEPELLMSSHVLRMPISVYIWDMKSANLKLIAEYGQEYSKENPIRVLFHSYGHYDLLKAP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3995260 3999256 - Cp4.1LG09g06000.1 Cpe09g00578 474944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00578 223 Pfam OTU-like cysteine protease 82 217 IPR003323 -
Cpe09g00578 223 PANTHER OTU DOMAIN CONTAINING PROTEIN 79 223 - -
Cpe09g00578 223 SUPERFAMILY Cysteine proteinases 74 221 IPR038765 -
Cpe09g00578 223 PANTHER OS09G0487700 PROTEIN 79 223 - -
Cpe09g00578 223 Coils Coil 105 125 - -
Cpe09g00578 223 Gene3D - 68 222 - -
Cpe09g00578 223 ProSiteProfiles OTU domain profile. 75 223 IPR003323 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00578 K18342 OTUD6; OTU domain-containing protein 6 [EC:3.4.19.12] - csv:101209836 239.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01387 Cpe-Chr8:9978662 Cpe09g00578 Cpe-Chr9:3995260 2.37E-32 dispersed
Cpe09g00388 Cpe-Chr9:2380034 Cpe09g00578 Cpe-Chr9:3995260 1.36E-50 dispersed
Cpe09g00578 Cpe-Chr9:3995260 Cpe03g00388 Cpe-Chr3:2090491 3.54E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1176 . . . . . . . . . Cmo18g00699 . Cma18g00711 . Car18g00656 . Cpe09g00578 . Bhi07g01897 . . . Hepe10g1531 . . . . . . . . . . . Cone8ag0739 . Lsi04g00664 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01356 . Cec11g1440 . Clacu11g1571 Cmu11g1391 Cre11g1812 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000657 2 7 1 4 3 2 4 2 3 3 3 3 3 3 3 4 3 4 4 3 3 3 2 2 2 3 2 8 5 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00578 Cpe_Chr09 FPKM 0.444781 0.431573 0.144385 0.270969 0.558107 0.804908 0.331021 0.246117 0.135762 0.184057