Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00579 ATGGATGTTCCCGACGTTGAAGAAATACTTTTTTCTCCCACTGATGCAAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGCAATTTATTGCCAGGTTATGTCAATTTTCCCTTCCCTGGAAGCAGCAAGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCACGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGGCACTGCTCGGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTGTATGCGTTGAAGATATTGTTTCAGAATCAATTGGATTTCAGATTCAGCAGATAGTGGACGAACTAAAGAACATTGTTTTCTTACTTGACCCACTTGAGAAACAAGTTGGTGATGATATCATTGGATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGTCATAATGAGTTGGAGCATTTTCATCAGGCCGCCACGAAACTGGGAATTACATCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAACCGAGTTGTCAGATGACACTGACTCACAGGGTGGATCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACCTACAGCCAACGGCCGAGTGTTTGAACATCAGCTCTCAAAGCTCAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAAATGCCTCTTCCACCTGAGGAATTGAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGCATTGAGAAATGGTTCAGTGATGGTCACAAAATCTGCCCGAAGACTCAATATTGGCTCTCCCATCTGTCCTTGACACCTAATTACTCTGTCAAAGGTCTTACTGCTAATTGGTGTGAATCTAACGGAGTTCCTATCCCTGATGGTCCGCCAAAGTCGCTTGATCTGAATTATTGGAGGCTTGCACTGTCTGATCCCGAGTCTGGACAATCAAGATCTGTGGACAAAGNAAGGGTGTTGGCTCTTGCATGTTGA 1179 42.66 MDVPDVEEILFSPTDAKLHGEMYKKLAAIYCQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEVSLVCVEDIVSESIGFQIQQIVDELKNIVFLLDPLEKQVGDDIIGLLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRTELSDDTDSQGGSTPCSPTVRCSLEDNGPTANGRVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKICPKTQYWLSHLSLTPNYSVKGLTANWCESNGVPIPDGPPKSLDLNYWRLALSDPESGQSRSVDKXRVLALAC 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4001540 4006834 - Cp4.1LG09g05970.1 Cpe09g00579 474945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00579 392 PANTHER U BOX DOMAIN-CONTAINING 1 386 - -
Cpe09g00579 392 MobiDBLite consensus disorder prediction 224 243 - -
Cpe09g00579 392 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 386 - -
Cpe09g00579 392 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cpe09g00579 392 CDD RING-Ubox_PUB 284 325 IPR045210 -
Cpe09g00579 392 SUPERFAMILY RING/U-box 274 356 - -
Cpe09g00579 392 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cpe09g00579 392 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cpe09g00579 392 MobiDBLite consensus disorder prediction 223 243 - -
Cpe09g00579 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01608 Cpe09g00579 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00579 Cpe-Chr9:4001540 Cpe14g00527 Cpe-Chr14:3329480 1.17E-55 dispersed
Cpe01g01608 Cpe-Chr1:9816481 Cpe09g00579 Cpe-Chr9:4001540 0 wgd
Cpe11g00066 Cpe-Chr11:355247 Cpe09g00579 Cpe-Chr9:4001540 0 wgd
Cpe07g00054 Cpe-Chr7:256630 Cpe09g00579 Cpe-Chr9:4001540 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00579 - - csv:101210079 702.205