Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00596 ATGTCTCAGGTTGATAGCAGGAATTCCTCTGCTGCCAAACGTGCTAGAACCGATGGTAGCCGAAGGGAAGATGACTGGACGTGTCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAACCACGTCCGGCTGATCATAATTCTAAATCTGCTGCCAAGCCTGTTCATGCTCCACAGGGCTACTCCTATTCTGCCCCTTACATGGGTTCTGGTGCACCCTCTTCAATGTATCCTGGCGTACCACCTTATGGTTCTTCTATATTCAACGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGATTTTCTGCAGGCAGCCCCTACAGACCTTTGCACCTATCTGGGCCTGCACCTTATTCTAGTGGATCTTTGATGGGAAATAGTGCAGTATATGGTATGCCACCCATAATGGATCGCTATGGCATTGCTTTGCCCATGGGCCCTGGGACCATGGGTCCAAGGCCAGGTTTTTTTCCGGATGACATGTCGCAGAAGAAGGGTGCAGACGCTACTCGTGACAACGATTGGCCATGTCCCAAATGCGGAAACATCAATTTCTCATTTAGAACCGTCTGTAACATGAGGAAATGCAACACGCCCAAGCCTGGGTCACAGGGTCCCAAAAATGATAAAGGTTCTAAACAAAAGACGCCGGAGGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAACTATCCATTCCGAACCAAATGCAATAGACAAAATTGTGGAGCCGACAAGCCAGCGGAGTCGGAGAAATCCCCATCACCGGCACAGGATGAAGACAATGAACAGTGGATTCCATATAATTTGATTAACAAGATAATTTTTGAACCACCAGAAAAGGGGAACCCTTTTGTGAGTTCTAGAACATGTTTGAGGGGGTTGAGAAGGTCCAGATTTATCTTCCAGCGTTGCTCAATATGGGTGTCTGAAAGTCAGTCTTGTCGTCCTCATGTTGCAGCAGTTGTCAAGTCAGTCTACCTCTCTTGA 1056 46.69 MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPVHAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPAPYSSGSLMGNSAVYGMPPIMDRYGIALPMGPGTMGPRPGFFPDDMSQKKGADATRDNDWPCPKCGNINFSFRTVCNMRKCNTPKPGSQGPKNDKGSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSPAQDEDNEQWIPYNLINKIIFEPPEKGNPFVSSRTCLRGLRRSRFIFQRCSIWVSESQSCRPHVAAVVKSVYLS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4131533 4135924 + Cp4.1LG09g05900.1 Cpe09g00596 474962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00596 351 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Cpe09g00596 351 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Cpe09g00596 351 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Cpe09g00596 351 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Cpe09g00596 351 MobiDBLite consensus disorder prediction 266 285 - -
Cpe09g00596 351 Gene3D - 184 225 - -
Cpe09g00596 351 Gene3D - 14 54 - -
Cpe09g00596 351 Gene3D - 232 271 - -
Cpe09g00596 351 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Cpe09g00596 351 PANTHER ZINC FINGER PROTEIN 5 285 - -
Cpe09g00596 351 SUPERFAMILY Ran binding protein zinc finger-like 189 225 IPR036443 -
Cpe09g00596 351 SMART zf_4 195 221 IPR001876 -
Cpe09g00596 351 SMART zf_4 241 267 IPR001876 -
Cpe09g00596 351 SMART zf_4 24 50 IPR001876 -
Cpe09g00596 351 MobiDBLite consensus disorder prediction 11 25 - -
Cpe09g00596 351 MobiDBLite consensus disorder prediction 220 241 - -
Cpe09g00596 351 PANTHER OS08G0521400 PROTEIN 5 285 - -
Cpe09g00596 351 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00596 - - - cmax:111492911 591.652
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01622 Cpe09g00596 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00596 Cpe-Chr9:4131533 Cpe11g00905 Cpe-Chr11:7401640 4.00E-06 dispersed
Cpe01g01622 Cpe-Chr1:9909388 Cpe09g00596 Cpe-Chr9:4131533 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00596 Cpe_Chr09 FPKM 31.972755 36.205139 0.37041 0.45625 0.78161 0.841046 0.881366 0.778024 0.984044 0.887091