Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00597 ATGGAGTGGAATGCAAGACCTTCTTTACAATGGGACTGGGAGAACTTAACGGTACTTAATCCAAGAATTTCCGGACATGGGGATATATTACATCCAACTAATTTTGAAAATAAACATGGAATAAATGTTGGATCTTCCAATTCAGTTGGGGACGCCAGAATTACTGGTGGTCCTTTTTTCGAGTTAGGGAAAACTTCTCCAAAAAACTCAAAGTCAGTTTCCCAAAATTCATTGTCGATTGAGAAAAGTCGAACAACCAAATTCACACTTGAGGGATTTGAGCCAACTTTAGAAGATATTGACAACAAATACAAATTTGTTGAGACTTCAATTTGCTCCTGTGAACCAATGCTCAGTCTGAAGCTTGGTAAGCAGGCATACTTCGAAAATACTAGTGCTGGAAATGTTAAAAAGCCATCTGTTCCCTTGATGGAATCCCAAGCTACTCGAAAGAGGTGCCAGAATACACCATCCCCTCACTGCCAAGTTGAAGGTTGTAACATAGATCTTTCGAATGCTAAGGATTACTATCGCAAACATAGAGTTTGTGAAAGCCATTCCAAATCTCCCAAGGTCATCATTGGAGGCATAGAGCGTCGGTTTTGCCAACAATGTAGTAGGTTTCATGGCATATCTGATTTTGATGAGAAGAAACGAAGCTGCCGTAGGCGTCTTTCTAATCATAATGCTCGACGTCGTAAGCCACAGTCAAAAGTGATCAGTCTGAATCCAGCAAGGCTATCTTCTTGGGATTTTGTAGAGAGGCGACAGATCGACGTTTTCTCAGACAAATTATCGCTCATCTATCCTATATCTCGTACAAATTCAGCATGGGAATCTGAATTGAACACCAGACACCCACAATGTGGCCAGTATGTATTAAAGTCAGAACAAGCATGTGGTTCGACAGGGCAGCTTAACGTATCAAGGAATGAGATGCGATGCGTGCGTGCTATGCCTTATCACGACACCAGTAAGCTCGTGACCTTCAAGGGACCTGCAACCAGGGTTCTTGATGCAGCTCAGGATCTTCAACGTGCTCTCTCTCTTCTGTCAACTGATTTAAAGGGTCCATATGAGGCAAAGCTCATTTCATCTGACAGCCCTAATAGTCTTAGTAACCCTAATTATGCTAACCAAACCGCCACATCGCAGTCGCCAATGGATCTCGGAATTCAAAGTCTGCCCTTTGCTTCAGTTGATTCAGGATGGCCCATTGAATCGCAGGTGCAGGTGCAGGTGCAAGTCCACCATCCGAGCAATGAAGGCAGTGGTTTGTTACAAGACTTGCAGCTCTTCAAAACACCATGCGAGATTGGTATGTTCTCTAACAGTTAA 1338 43.05 MEWNARPSLQWDWENLTVLNPRISGHGDILHPTNFENKHGINVGSSNSVGDARITGGPFFELGKTSPKNSKSVSQNSLSIEKSRTTKFTLEGFEPTLEDIDNKYKFVETSICSCEPMLSLKLGKQAYFENTSAGNVKKPSVPLMESQATRKRCQNTPSPHCQVEGCNIDLSNAKDYYRKHRVCESHSKSPKVIIGGIERRFCQQCSRFHGISDFDEKKRSCRRRLSNHNARRRKPQSKVISLNPARLSSWDFVERRQIDVFSDKLSLIYPISRTNSAWESELNTRHPQCGQYVLKSEQACGSTGQLNVSRNEMRCVRAMPYHDTSKLVTFKGPATRVLDAAQDLQRALSLLSTDLKGPYEAKLISSDSPNSLSNPNYANQTATSQSPMDLGIQSLPFASVDSGWPIESQVQVQVQVHHPSNEGSGLLQDLQLFKTPCEIGMFSNS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4138283 4142716 - Cp4.1LG09g05830.1 Cpe09g00597 474963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00597 445 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Cpe09g00597 445 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 33 441 - -
Cpe09g00597 445 MobiDBLite consensus disorder prediction 365 384 - -
Cpe09g00597 445 Gene3D - 157 222 IPR036893 GO:0003677|GO:0005634
Cpe09g00597 445 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 441 IPR044817 GO:0003677
Cpe09g00597 445 Pfam SBP domain 161 234 IPR004333 GO:0003677
Cpe09g00597 445 SUPERFAMILY SBT domain 159 240 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00597 - - - cmax:111492685 657.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01229 Cpe09g00597 CCT
Cpe03g01229 Cpe09g00597 ECH
Cpe01g01623 Cpe09g00597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00379 Cpe-Chr3:2034922 Cpe09g00597 Cpe-Chr9:4138283 5.50E-42 dispersed
Cpe03g01830 Cpe-Chr3:13648333 Cpe09g00597 Cpe-Chr9:4138283 6.27E-38 dispersed
Cpe08g00634 Cpe-Chr8:4216783 Cpe09g00597 Cpe-Chr9:4138283 2.66E-40 dispersed
Cpe08g01392 Cpe-Chr8:10007597 Cpe09g00597 Cpe-Chr9:4138283 3.27E-40 dispersed
Cpe09g00597 Cpe-Chr9:4138283 Cpe01g00972 Cpe-Chr1:5787938 1.09E-35 dispersed
Cpe01g01623 Cpe-Chr1:9915394 Cpe09g00597 Cpe-Chr9:4138283 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014120 1 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 1 2 1 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50004 PF03110 SBP 1.00E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00597 Cpe_Chr09 FPKM 5.578014 7.311975 1.461037 1.443147 3.743046 3.844087 3.938135 3.098473 2.693243 2.263227