Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00598 ATGAGTGGCATGAATCAACAACATCCCACCAAAAAAAGGCTCATGCCAATCTCACCCTCAGTAGCTCTACAAATTTCTCATCCACAAAGCATGATACAAGCTTTCTCAGCTCCTCCTTTAAGAAGAGGGAGACGCTCGTTGATGTCTGCAGCAACCAACAACTCCGCCATGGCTACTTGCATTCGGGATTCGGTAGAGGACGAGGAACACATTTTCCGTAGCCAACTTCCCGAGGTCCAAGTGCCTGATGATATCACATTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGATAATGTGGCATTTGTGGAAGCTGTGAGCGGAAATGCGTACACTTATCGTGAAGTTGTGAGAGACACGAGTAGGTTCGCTAAGGCCTTGAGCTCTCTGAGGTTGAAGAAGGGGCAGGTCGTTATTGTCGTTCTACCCAACGTTGCTGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCTGAAATCAAAAAGCAGGTGGAGGTAGCAGATGCCAAACTCGTCGTTACAAACAGCTCAAGCTTTGAAAAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCCTTGGTTAAGAATCCTATTGTGAAGGAATTTGATCTAAGCGGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCCGAACTTCAAACGTCCTTCGAGAAAAAGTTCCCGGGCGTGGATGTTCAAGAGGCATATGGGCTAACCGAGCACAGCTGCATCACTCTCAACTATGGAAGCATAGGCAAAGACAATCTCGCTGCAAAGAAAAACACGGTTGGCCGTATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCCGACAGCGGTAGGTCGCTGCCGAAGAACACGCCTGGGGAAATCTGTGTTGCTCCGGCCGAGTTAGAGGCAATCCTCCTTACTCATCCCTCGATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACAAAGAAGCCGGTGAGATCCCAGCAGCAAGCATTGTAATGGCTCCAAATGCAAAAGAAACCGAAGACGAAATAATCAAATACGTCGCTTCAAACGTTGCACATTACAAGAAAGTTAGGCTTGTTCATTTTGTCGAAACGATCCCGAAATCGCCGTCTGGGAAAGTCATGAGAAGGTTGATCAAAGAGAAGATGATCGAAAAGATTCGAGCCGAGACGGCCTCTTGA 1248 47.52 MSGMNQQHPTKKRLMPISPSVALQISHPQSMIQAFSAPPLRRGRRSLMSAATNNSAMATCIRDSVEDEEHIFRSQLPEVQVPDDITLPEFVLQNAESYADNVAFVEAVSGNAYTYREVVRDTSRFAKALSSLRLKKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVADAKLVVTNSSSFEKEVTFAPIVPPIILALVKNPIVKEFDLSGLKLQAIMTAAAPLAPELQTSFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKDNLAAKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVAPAELEAILLTHPSIEDAAVVPLPDKEAGEIPAASIVMAPNAKETEDEIIKYVASNVAHYKKVRLVHFVETIPKSPSGKVMRRLIKEKMIEKIRAETAS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4145298 4149751 - Cp4.1LG09g05870.1 Cpe09g00598 474964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00598 415 Gene3D - 197 316 IPR042099 -
Cpe09g00598 415 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 316 408 - -
Cpe09g00598 415 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 197 316 - -
Cpe09g00598 415 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 63 197 - -
Cpe09g00598 415 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 63 197 - -
Cpe09g00598 415 Pfam AMP-binding enzyme 198 317 IPR000873 -
Cpe09g00598 415 Pfam AMP-binding enzyme 93 192 IPR000873 -
Cpe09g00598 415 SUPERFAMILY Acetyl-CoA synthetase-like 72 405 - -
Cpe09g00598 415 Gene3D - 65 196 IPR042099 -
Cpe09g00598 415 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 316 408 - -
Cpe09g00598 415 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 197 316 - -
Cpe09g00598 415 Pfam AMP-binding enzyme C-terminal domain 320 395 IPR025110 -
Cpe09g00598 415 Gene3D - 317 409 IPR045851 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00598 K01904 4CL; 4-coumarate--CoA ligase [EC:6.2.1.12] - csv:101220731 275.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00598 Cpe-Chr9:4145298 Cpe09g00974 Cpe-Chr9:8675363 1.98E-29 dispersed
Cpe09g00598 Cpe-Chr9:4145298 Cpe20g00318 Cpe-Chr20:1796227 8.98E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1259 . . . . . Bpe10g00762 . Bma15g00260 . Cmo18g00635 . Cma18g00686 . Car18g00637 Sed06g1758 Cpe09g00598 . Bhi07g01934 Tan04g0037 Cmetu10g1318 Lac13g0042 Hepe10g1506 . . . . . . . . . . . . . Lsi04g00690 . . Cme10g00674 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01330 Cam11g1389 Cec11g1410 Cco11g1407 Clacu11g1547 Cmu11g1368 Cre11g1786 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009702 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00598 Cpe_Chr09 FPKM 43.753193 46.527382 26.253176 23.803936 18.409155 18.954485 18.917803 15.745847 16.864962 15.322971