Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00608 ATGGCTTCGGTTGGGCCGTCGCCCTCCCTTAAGAAACGGGAGTCGTCCGCGACGAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGCAATGAAGTGGGTCGGTCCTGCGTTTATATGTCTTACAAAGGCAAAATTGTGTTGTTTGATTGTGGAATTCACCCCGCTTACTCTGGCATGGCTGCTTTGCCTTACTTCGATGAAATCGACCCGTCAACAATTGATGTCCTGCTCATTACCCACTTTCATTTGGATCACGCTGCATCACTCCCTTATTTTTTGGAGAAGACTACATTCAAAGGGCGAGTCTTTATGACTTATGCTACAAAAGCAATCTACAAGTTGTTGCTGTCAGACTTTGTGAAAGTGAGCAAAGTGTCCATTGAAGATATGTTGTACGATGAGCAGGACATAAATCGTTCCATGGACAAAATTGAGGTCATTGATTTCCATCAAACAGTAGAAGTAAATGGTATTCGGTTTTGGTGTTACACTGCTGGTCATGTGCTTGGTGCTGCCATGTTTATGGTAGATATTGCTGGTGTCCGAGTCCTCTACACTGGAGACTATTCACGTGAAGAAGACCGACATCTTCGAGCTGCTGAAATGCCTCAATTTTCTCCTGATGTTTGCATAATTGAATCTACATATGGTGTCCAGCTCCATCAACCTCGGCATATTCGAGAAAAGCGCTTCACTGATGTTGTACATTCAACCATTTCTCAAGGTGGTCGTGTGCTGATTCCAGCTTTTGCCCTTGGACGTGCCCAGGAACTCCTCCTTATTCTTGATGAGTATTGGGCAAACCATCCAGAGCTCCATAATGTTCCCATATATTATGCTTCTCCTCTGGCAAAAAGATGTTTGACCGTATACGAGACGTACACACTTTCCATGAACGATAGGATCCAAAATGCCAAATCTAACCCCTTCAGATTCAAGTACATATCCCCACTAAAGAGCATTGAAGTTTTTAAGGATGTTGGCCCATCAGTGGTGATGGCCAGTCCTGGTGGCCTTCAGAGTGGTTTGTCCCGACAACTCTTTGACCTGTGGTGTTCTGATAAGAAGAACTCATGTGTGCTTCCTGGTTATGTCGTTGAAGGGACACTGGCTAAGACTATAATCAATGAACCAAAGGAAGTCACCCTCATGAGCGGACTTATGGCTCCTCTTAACATGCAGGTTCATTACATTTCCTTCTCTGCTCATGCCGACTATGCACAGACCAGCGCGTTCTTGGAAGAGCTCATGCCGCCCAACATAATTCTTGTCCATGGAGAAGCTAATGAGATGGGAAGGCTCAAACAGAAGCTTATGTCCAAGTTTGCTGATCGTAACACCAAGATTCTTACTCCAAAGAATTGTCAATCTGTTGAAATGTACTTCAACTCCCAGAAGATGGCAAAAACTATCGGAAAATTGGCCGAGAACACCCCTGAAGTCGATGAAACGGTCAGCGGATTACTGGTGAAGAAAGGATTTGCTTATCAGATAATGGCACCAGATGATCTACACATCTTCTCCCAGCTATCAACTGCAAACATCTACCAGCGTATCACGATTCCGTACACCAACGCCTTCAATGTGATTGTACGTCGGCTCAAACAGGTATATGAAAGTGTAGAATCGTCAACAGACGAAGAATCTGGTGTCCCAACAGTTCGTGTGCACGATCGTGTGACAGTGAAGCACGAGTCGGAGAGACATGTCTCACTTCACTGGACATCAGACCCGTTAAGCGACATGGTATCGGATTCAGTTGTAGCTCTCATTCTGAACATCAACCGGGAAGTTCCGAAAGTCATTGTGGAGTCGGAGGCCGTGAAAACGGAAGAGGAGAACGAGAAGAAAGCAGAGAAGGTAATTCATGCTCTCCTTGTTTCACTTTTTGGCGATGTAAAGTTGGGAGAGAATGGGAAGCTGGTAGTTAACGTTGATGGGAGTATAGCAGAGGTTGATAAACAGAGTGGGGAGGTAGAAAGTGAAAATGAAGCTCTGAAAGAAAGAGTAAAAACAGCATTCCTGCGAATCCAAAGTGCAGTGAAGCCAATTCCTCTCTCTGCACCATAA 2079 45.07 MASVGPSPSLKKRESSATREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSIEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNVPIYYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGLSRQLFDLWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAHADYAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSKFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAENTPEVDETVSGLLVKKGFAYQIMAPDDLHIFSQLSTANIYQRITIPYTNAFNVIVRRLKQVYESVESSTDEESGVPTVRVHDRVTVKHESERHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGENGKLVVNVDGSIAEVDKQSGEVESENEALKERVKTAFLRIQSAVKPIPLSAP 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4239934 4244106 + Cp4.1LG09g05790.1 Cpe09g00608 474974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00608 692 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 393 446 IPR011108 -
Cpe09g00608 692 Gene3D - 29 434 IPR036866 -
Cpe09g00608 692 SMART CPSF73_100_C_2 484 687 IPR021718 -
Cpe09g00608 692 Coils Coil 652 672 - -
Cpe09g00608 692 Gene3D - 226 405 - -
Cpe09g00608 692 PANTHER - 7 688 - -
Cpe09g00608 692 CDD CPSF3-like_MBL-fold 24 217 - -
Cpe09g00608 692 Pfam Beta-Casp domain 258 377 IPR022712 -
Cpe09g00608 692 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 7 688 - -
Cpe09g00608 692 SMART Lactamase_B_5a 36 224 IPR001279 -
Cpe09g00608 692 SUPERFAMILY Metallo-hydrolase/oxidoreductase 22 465 IPR036866 -
Cpe09g00608 692 Pfam Metallo-beta-lactamase superfamily 35 200 IPR001279 -
Cpe09g00608 692 SMART Beta_Casp_2 258 377 IPR022712 -
Cpe09g00608 692 Pfam Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term 487 686 IPR021718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00608 K14403 CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] - csv:101221902 1302.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01855 Cpe09g00608 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00608 Cpe-Chr9:4239934 Cpe16g00177 Cpe-Chr16:3910921 3.58E-83 dispersed
Cpe01g01632 Cpe-Chr1:9981562 Cpe09g00608 Cpe-Chr9:4239934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g526 . . . . Bpe13g01001 . . . . . . Cma04g00083 . Car04g00084 . Cpe09g00608 Cpe01g01855 . . . . . . . . . . . . . . . . . Cone9ag0379 . Csa05g01972 . . . . . . . . . Bma06g01137 . Cmo04g02230 . Cma04g02137 . Car04g02074 . . . Bhi12g00959 . . . Hepe02g2605 . Lcy10g1600 Cla01g00649 Cam01g0678 Cec01g0671 Cco01g0697 Clacu01g0666 Cmu01g0639 Cre09g1866 Lsi09g00702 Csa05g01125 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005871 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 2 1 1 1 1 1 1 4 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00608 Cpe_Chr09 FPKM 2.09814 1.124887 2.964781 2.14307 2.54185 1.984013 1.741005 1.360435 1.71631 0.855501