Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00609 TTTAGAGAAAACAGAGAGTGGGAGAAAAAACCGGGTCTGAATTCATTCGACCGGGCGGTTCGGATAGCGAACGGTCATTTGCAGGCGAATTCCGGTCCACCAATACTGAGCAGACTAAACCAGCAAACCGACATGAACACCGAACCTGAAAGCTTCCCGTCTCTATCGTGTTCTCGTCTCTCTCCCCTTGCTTATTCATCTCGCGCCGCGCGCCCTCTAATCTGTTCCTCCACAAAAGGGGAGGGAGACAGAGACAGCGACAGAGACATGGAGACTTACTTTAATCACAATCTGTTCGAGAGGCGTCCCATTGTGAAGAACAAGACTCCTGCTGCTAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTCACAGAGGATACATTGAAGGCATTAAAGGAGAAGACAAAACAATCGGAGGCACCAGAACCTGAGCCAGAACCCACAACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGAAGGTTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCGCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCTCACGAGTACAAATTGAAAAACCACATTACATCTCACCATGAAAAGAACATGACAGCTGAAGTGGTCAAATATACACCACCTACTGAGAAGCAAACTAAGGTTTCTAAACCATCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCCTACGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAACTTAAACTCCATTTAAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCATCACAATGGGGAAAATGAGATAGAAGGCAGTGATCAAGACGGGTACGGCGGTAAACGGGTAAATACGAAAAACCAGAAACAGAACAAGCCTAAACCAAAGTTGAAGTTACCACCTTCCAAAATATCACAGAGAAAAGGCACAACTTCATCTCCTGCCCCAATTAGTGTAAAAAAATCATGGCCTGCTAAAGAAGAAACCTACGAGGAAGAAGATAGCGAAGAGACGGAGGAGGACCGTGAGAACGTGGAGGAGGGTTGGCAATATGCCGAAAACGAAGACGACGATGAGGAAACGGAGTATGAAGATTAA 1374 44.4 FRENREWEKKPGLNSFDRAVRIANGHLQANSGPPILSRLNQQTDMNTEPESFPSLSCSRLSPLAYSSRAARPLICSSTKGEGDRDSDRDMETYFNHNLFERRPIVKNKTPAAKWIKEWVPQDVVATGGKCFLLKWVTEDTLKALKEKTKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNMTAEVVKYTPPTEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAHHNGENEIEGSDQDGYGGKRVNTKNQKQNKPKPKLKLPPSKISQRKGTTSSPAPISVKKSWPAKEETYEEEDSEETEEDRENVEEGWQYAENEDDDEETEYED 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4244947 4250059 - Cp4.1LG09g05690.1 Cpe09g00609 474975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00609 457 PANTHER BNAA03G13270D PROTEIN 94 456 - -
Cpe09g00609 457 ProSitePatterns Zinc finger C2H2 type domain signature. 320 343 IPR013087 -
Cpe09g00609 457 MobiDBLite consensus disorder prediction 295 309 - -
Cpe09g00609 457 MobiDBLite consensus disorder prediction 293 316 - -
Cpe09g00609 457 SUPERFAMILY beta-beta-alpha zinc fingers 313 341 IPR036236 -
Cpe09g00609 457 SUPERFAMILY beta-beta-alpha zinc fingers 206 259 IPR036236 -
Cpe09g00609 457 ProSitePatterns Zinc finger C2H2 type domain signature. 168 190 IPR013087 -
Cpe09g00609 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cpe09g00609 457 Gene3D Classic Zinc Finger 251 280 - -
Cpe09g00609 457 Gene3D Classic Zinc Finger 292 359 - -
Cpe09g00609 457 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
Cpe09g00609 457 SUPERFAMILY beta-beta-alpha zinc fingers 169 219 IPR036236 -
Cpe09g00609 457 ProSitePatterns Zinc finger C2H2 type domain signature. 227 249 IPR013087 -
Cpe09g00609 457 Gene3D Classic Zinc Finger 192 222 - -
Cpe09g00609 457 SUPERFAMILY beta-beta-alpha zinc fingers 249 282 IPR036236 -
Cpe09g00609 457 SMART c2h2final6 225 249 IPR013087 -
Cpe09g00609 457 SMART c2h2final6 166 190 IPR013087 -
Cpe09g00609 457 SMART c2h2final6 318 343 IPR013087 -
Cpe09g00609 457 SMART c2h2final6 195 219 IPR013087 -
Cpe09g00609 457 SMART c2h2final6 255 279 IPR013087 -
Cpe09g00609 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 284 IPR013087 -
Cpe09g00609 457 Gene3D Classic Zinc Finger 223 250 - -
Cpe09g00609 457 Gene3D Classic Zinc Finger 166 191 - -
Cpe09g00609 457 Pfam Zinc finger, C2H2 type 255 279 IPR013087 -
Cpe09g00609 457 Pfam Zinc finger, C2H2 type 225 249 IPR013087 -
Cpe09g00609 457 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 94 456 - -
Cpe09g00609 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 318 345 IPR013087 -
Cpe09g00609 457 MobiDBLite consensus disorder prediction 421 457 - -
Cpe09g00609 457 ProSitePatterns Zinc finger C2H2 type domain signature. 197 219 IPR013087 -
Cpe09g00609 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 224 IPR013087 -
Cpe09g00609 457 MobiDBLite consensus disorder prediction 346 368 - -
Cpe09g00609 457 MobiDBLite consensus disorder prediction 396 410 - -
Cpe09g00609 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 254 IPR013087 -
Cpe09g00609 457 MobiDBLite consensus disorder prediction 346 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01200 Cpe-Chr1:7153290 Cpe09g00609 Cpe-Chr9:4244947 4.78E-06 dispersed
Cpe09g00454 Cpe-Chr9:2929361 Cpe09g00609 Cpe-Chr9:4244947 6.43E-06 dispersed
Cpe09g00609 Cpe-Chr9:4244947 Cpe20g00334 Cpe-Chr20:1874271 1.70E-12 dispersed
Cpe01g01634 Cpe-Chr1:9994593 Cpe09g00609 Cpe-Chr9:4244947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50005 PF00096 zf-C2H2 0.0064 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00609 - - mcha:111019807 660.218