Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe09g00622 | ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGATCTCGGGATGAAGCCCAGATGAGACAACAACAGCAGCAACAGCAACAACAGCAGCAACAACAACAACAGCAATCTAATTCTTCGGGTGTGGCGCCACCGAAGAAAAAGAGGAACCAACCAGGAACACCGAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACACTAATGGCAACCAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTTCATAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCAATAAAGAGCCAAAAAGGAAGGTGTATTTATGCCCAGAACCCACATGCGTCCATCACGACCCATCAAGAGCTCTTGGTGACTTAACAGGTATCAAAAAACATTACTCCAGAAAGCATGGGGAGAAGAAATGGAAGTGCGATAAGTGCTCTAAACGCTATGCCGTTCAGTCTGATTGGAAGGCCCATTCCAAGACCTGTGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTTTTCTCCAGACGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACATCCTACAAATTTAGGGTCAGCAATGGGAGGCCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTTCCTCAAATGTCATCTCTTCAAGATATTCCCAATATAACCCAATCGGACGTCCTCCGTCTTGGCGGTGGAGGACGAACCGGGCAGTTCAATCATCTTCTTCCTCCGTCTATCGGTTCGTCGTTTCGACCACCACCGCAACAGGCAATGCCGTCTTCGGCTGCGGCTGCGGCGTTCTTCTTGAATGATCAAACTAGCCAGAATAGCTTCCATGAGGATCATGGAAGTCAATCTCAACAAGGGTTGTTTGGAAACAAGGCGTTTCATGGATTAATGCAATTTTCTGATATGCAAAGTCATACGAGTAATAGTAACAACCCTTCCTCAAATCTCTTCAATTTGGGGTTCATTTCGAACCCGACGGGTGATAGTACGACGAATATGAACAACAACAACAACACCAACAGTAATAATACGAGTAATAGCAACAACAACAGCAACAGCAACAACAACAATCTTCAATCGTCTTTGCTTAATCAATTCAATGGCACGAACAATGGCAACAATGAAGGTGGTGGTGCATCAAACATTTTCTCAATGATGGGTGATCAAATGAATTCAGGTGCAGTCCCGTCTCTCTATAGCAACACGACGGGAGTCGGTGGTAGCGGTACGAGCGGAGCAATTCCACACATGTCAGCAACGGCGCTTCTCCAAAAGGCAGCTCAATTAGGCTCAACAACGTCAAGTAGCAACACAACAGCGACATTGCTAAGATCATTTGGAAGCTCGTCAACTTCAGGTGGGAAAGCATCCGATAGGACGCTTTTCCCACCGAGCTACGGCGGAGTATTCGGTGAAAATGAGAGCAATCTTCAAGATCTAATGAACTCATTCACCACCGGAAACTCAACCGGTGGGCTCTTCGGTGGCGGGATGAGCTCATTCGGTACATTCGACGGCGGAAACAATAGACCAAACAACATGGAAACATTGGAAGATCCGAAATTACAACAGAATCTAAGCTCAGTTAGCATGGGAGGAACAGATAGATTAACAAGAGACTTCCTAGGCGTTGGACAAATTGTAAGAAGTATGAGTAGCGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGTGGCGGCGGTTATTCGCAACGAGAACATAAACAACCGCCGCAAGGGATCGTTATGGAGGGAAATGAGAGCAATTCAGCTGCATCAAGCCAAGCATTTGGTGGTGGAGGAAATGGAAACTACCAGTGA | 1905 | 46.04 | MAASSSSVPLFGSRDEAQMRQQQQQQQQQQQQQQQQSNSSGVAPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAMGGHLYGGNSNVGLTLSQVPQMSSLQDIPNITQSDVLRLGGGGRTGQFNHLLPPSIGSSFRPPPQQAMPSSAAAAAFFLNDQTSQNSFHEDHGSQSQQGLFGNKAFHGLMQFSDMQSHTSNSNNPSSNLFNLGFISNPTGDSTTNMNNNNNTNSNNTSNSNNNSNSNNNNLQSSLLNQFNGTNNGNNEGGGASNIFSMMGDQMNSGAVPSLYSNTTGVGGSGTSGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRSFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGNSTGGLFGGGMSSFGTFDGGNNRPNNMETLEDPKLQQNLSSVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGGGGGGGGGYSQREHKQPPQGIVMEGNESNSAASSQAFGGGGNGNYQ | 634 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4502966 | 4507170 | + | Cp4.1LG09g05600.1 | Cpe09g00622 | 474988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe09g00622 | 634 | MobiDBLite | consensus disorder prediction | 331 | 412 | - | - | |
| Cpe09g00622 | 634 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 77 | 97 | IPR013087 | - | |
| Cpe09g00622 | 634 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 337 | 583 | - | - | |
| Cpe09g00622 | 634 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 335 | - | - | |
| Cpe09g00622 | 634 | SMART | c2h2final6 | 116 | 146 | IPR013087 | - | |
| Cpe09g00622 | 634 | SMART | c2h2final6 | 75 | 97 | IPR013087 | - | |
| Cpe09g00622 | 634 | SMART | c2h2final6 | 151 | 171 | IPR013087 | - | |
| Cpe09g00622 | 634 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 75 | 97 | IPR013087 | - | |
| Cpe09g00622 | 634 | SUPERFAMILY | beta-beta-alpha zinc fingers | 74 | 171 | IPR036236 | - | |
| Cpe09g00622 | 634 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Cpe09g00622 | 634 | Gene3D | Classic Zinc Finger | 54 | 123 | - | - | |
| Cpe09g00622 | 634 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cpe09g00622 | 634 | Coils | Coil | 14 | 36 | - | - | |
| Cpe09g00622 | 634 | Pfam | Zinc-finger double-stranded RNA-binding | 75 | 97 | IPR022755 | - | |
| Cpe09g00622 | 634 | MobiDBLite | consensus disorder prediction | 610 | 634 | - | - | |
| Cpe09g00622 | 634 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 438 | 448 | IPR023828 | - | |
| Cpe09g00622 | 634 | Gene3D | Classic Zinc Finger | 129 | 208 | - | - | |
| Cpe09g00622 | 634 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 337 | 583 | - | - | |
| Cpe09g00622 | 634 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 1 | 335 | - | - | |
| Cpe09g00622 | 634 | MobiDBLite | consensus disorder prediction | 577 | 634 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00883 | Cpe-Chr1:5199600 | Cpe09g00622 | Cpe-Chr9:4502966 | 0 | dispersed | |
| Cpe09g00622 | Cpe-Chr9:4502966 | Cpe10g00600 | Cpe-Chr10:3504977 | 1.10E-108 | dispersed | |
| Cpe09g00622 | Cpe-Chr9:4502966 | Cpe03g00175 | Cpe-Chr3:867681 | 6.68E-113 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50006 | PF12171 | zf-C2H2_jaz | 3.90E-05 | CL0361 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe09g00622 | K25870 | - | csv:116401647 | 811.216 |