Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00622 ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGATCTCGGGATGAAGCCCAGATGAGACAACAACAGCAGCAACAGCAACAACAGCAGCAACAACAACAACAGCAATCTAATTCTTCGGGTGTGGCGCCACCGAAGAAAAAGAGGAACCAACCAGGAACACCGAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACACTAATGGCAACCAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTTCATAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCAATAAAGAGCCAAAAAGGAAGGTGTATTTATGCCCAGAACCCACATGCGTCCATCACGACCCATCAAGAGCTCTTGGTGACTTAACAGGTATCAAAAAACATTACTCCAGAAAGCATGGGGAGAAGAAATGGAAGTGCGATAAGTGCTCTAAACGCTATGCCGTTCAGTCTGATTGGAAGGCCCATTCCAAGACCTGTGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTTTTCTCCAGACGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACATCCTACAAATTTAGGGTCAGCAATGGGAGGCCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTTCCTCAAATGTCATCTCTTCAAGATATTCCCAATATAACCCAATCGGACGTCCTCCGTCTTGGCGGTGGAGGACGAACCGGGCAGTTCAATCATCTTCTTCCTCCGTCTATCGGTTCGTCGTTTCGACCACCACCGCAACAGGCAATGCCGTCTTCGGCTGCGGCTGCGGCGTTCTTCTTGAATGATCAAACTAGCCAGAATAGCTTCCATGAGGATCATGGAAGTCAATCTCAACAAGGGTTGTTTGGAAACAAGGCGTTTCATGGATTAATGCAATTTTCTGATATGCAAAGTCATACGAGTAATAGTAACAACCCTTCCTCAAATCTCTTCAATTTGGGGTTCATTTCGAACCCGACGGGTGATAGTACGACGAATATGAACAACAACAACAACACCAACAGTAATAATACGAGTAATAGCAACAACAACAGCAACAGCAACAACAACAATCTTCAATCGTCTTTGCTTAATCAATTCAATGGCACGAACAATGGCAACAATGAAGGTGGTGGTGCATCAAACATTTTCTCAATGATGGGTGATCAAATGAATTCAGGTGCAGTCCCGTCTCTCTATAGCAACACGACGGGAGTCGGTGGTAGCGGTACGAGCGGAGCAATTCCACACATGTCAGCAACGGCGCTTCTCCAAAAGGCAGCTCAATTAGGCTCAACAACGTCAAGTAGCAACACAACAGCGACATTGCTAAGATCATTTGGAAGCTCGTCAACTTCAGGTGGGAAAGCATCCGATAGGACGCTTTTCCCACCGAGCTACGGCGGAGTATTCGGTGAAAATGAGAGCAATCTTCAAGATCTAATGAACTCATTCACCACCGGAAACTCAACCGGTGGGCTCTTCGGTGGCGGGATGAGCTCATTCGGTACATTCGACGGCGGAAACAATAGACCAAACAACATGGAAACATTGGAAGATCCGAAATTACAACAGAATCTAAGCTCAGTTAGCATGGGAGGAACAGATAGATTAACAAGAGACTTCCTAGGCGTTGGACAAATTGTAAGAAGTATGAGTAGCGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGTGGCGGCGGTTATTCGCAACGAGAACATAAACAACCGCCGCAAGGGATCGTTATGGAGGGAAATGAGAGCAATTCAGCTGCATCAAGCCAAGCATTTGGTGGTGGAGGAAATGGAAACTACCAGTGA 1905 46.04 MAASSSSVPLFGSRDEAQMRQQQQQQQQQQQQQQQQSNSSGVAPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAMGGHLYGGNSNVGLTLSQVPQMSSLQDIPNITQSDVLRLGGGGRTGQFNHLLPPSIGSSFRPPPQQAMPSSAAAAAFFLNDQTSQNSFHEDHGSQSQQGLFGNKAFHGLMQFSDMQSHTSNSNNPSSNLFNLGFISNPTGDSTTNMNNNNNTNSNNTSNSNNNSNSNNNNLQSSLLNQFNGTNNGNNEGGGASNIFSMMGDQMNSGAVPSLYSNTTGVGGSGTSGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRSFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGNSTGGLFGGGMSSFGTFDGGNNRPNNMETLEDPKLQQNLSSVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGGGGGGGGGYSQREHKQPPQGIVMEGNESNSAASSQAFGGGGNGNYQ 634
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 4502966 4507170 + Cp4.1LG09g05600.1 Cpe09g00622 474988
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00622 634 MobiDBLite consensus disorder prediction 331 412 - -
Cpe09g00622 634 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Cpe09g00622 634 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 337 583 - -
Cpe09g00622 634 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 335 - -
Cpe09g00622 634 SMART c2h2final6 116 146 IPR013087 -
Cpe09g00622 634 SMART c2h2final6 75 97 IPR013087 -
Cpe09g00622 634 SMART c2h2final6 151 171 IPR013087 -
Cpe09g00622 634 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Cpe09g00622 634 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Cpe09g00622 634 MobiDBLite consensus disorder prediction 1 60 - -
Cpe09g00622 634 Gene3D Classic Zinc Finger 54 123 - -
Cpe09g00622 634 MobiDBLite consensus disorder prediction 1 45 - -
Cpe09g00622 634 Coils Coil 14 36 - -
Cpe09g00622 634 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Cpe09g00622 634 MobiDBLite consensus disorder prediction 610 634 - -
Cpe09g00622 634 ProSitePatterns Serine proteases, subtilase family, serine active site. 438 448 IPR023828 -
Cpe09g00622 634 Gene3D Classic Zinc Finger 129 208 - -
Cpe09g00622 634 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 337 583 - -
Cpe09g00622 634 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 335 - -
Cpe09g00622 634 MobiDBLite consensus disorder prediction 577 634 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00883 Cpe-Chr1:5199600 Cpe09g00622 Cpe-Chr9:4502966 0 dispersed
Cpe09g00622 Cpe-Chr9:4502966 Cpe10g00600 Cpe-Chr10:3504977 1.10E-108 dispersed
Cpe09g00622 Cpe-Chr9:4502966 Cpe03g00175 Cpe-Chr3:867681 6.68E-113 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50006 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00622 K25870 - csv:116401647 811.216