Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00642 AGCGAGTTGCGGGAAAATGGTGGCCTGTTAATGCCGAGTGGTGAAGATTTAAGCAGGTGGAAGCCAGAGAGTGAATGTTGGGGGAAAATCATTAAGCTAACTGCGGAATTAATGAAGATCTTTGTTGATTTTGAGATGGAGTCTGGTGATGTTGAACAATCCTTGCTTCCCAAGCTGTCCGATTCCAAAAAGAGGAATTCTCTCCAGAGAAGAAAATCGATCCATCATGAAATTTTTTCACGTTCATTAGAACATAACAATCAACCACGAAACGGTGATGAAGTGTCTTATCAGCGTGTGGTTGTTAAACAAGTTAGTTTTAGGAAAGTATTTGTTGTGTTGGCTACTTATTTGGGAGGAGGAACACTTTGTTTCTTCCTTGTTGGAGATCAAATCAATGGCAAGAAAACAAACGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACTGTTGGGTATGGTGATCTTGTTCCTAATAGCATTGGTGCAAAACTACTTGCTTGTGCTTATGTCTTCACTGGAATTACTCTTGGTGGGATGCTTCTTAGCAGGGCGGCTGATTACATTGTCGAAAAGCAGGAAATTCATCTGGTTAAGGCCATTTTCATGAGCAAAAAGATCAGCTCCGGTGAGCTCCTTCGAGAGTCTGTGGCACACAAACTCAAATACAAAATCATTATGACTGGAATCGTCCTTTGGGTTCTCGTCGTTGTCGGTACTCTTTTCTTGATTCTGGTTGAGAAGTTTGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTAGGCTATGGGGACAAGAGCTTCTCTACAACAACTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCCGAATTACGCGCCGAGAGGAGACAGAAATCACTAGTGAATAGGGTTCTCTCCCGAGACCTCACTTTCTCTGATCTCGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCTGAATTTGTTGTATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGATGTTTCTCCAATACTTGACACTTTTTATAAGCTTGACATTGATCAATCAGGAAACTTAACAGAAGCTGATTTAGTAACTTCATAG 1161 41.09 SELRENGGLLMPSGEDLSRWKPESECWGKIIKLTAELMKIFVDFEMESGDVEQSLLPKLSDSKKRNSLQRRKSIHHEIFSRSLEHNNQPRNGDEVSYQRVVVKQVSFRKVFVVLATYLGGGTLCFFLVGDQINGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIGAKLLACAYVFTGITLGGMLLSRAADYIVEKQEIHLVKAIFMSKKISSGELLRESVAHKLKYKIIMTGIVLWVLVVVGTLFLILVEKFEFTDAFYCVCSTITTLGYGDKSFSTTTGRVFAVIWIMSSTICLAQFFLYLAELRAERRQKSLVNRVLSRDLTFSDLEEADLDHDKVVSAAEFVVYKLKEMGKINQEDVSPILDTFYKLDIDQSGNLTEADLVTS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4849942 4852886 + Cp4.1LG09g06560.1 Cpe09g00642 475008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00642 386 Gene3D - 101 206 - -
Cpe09g00642 386 Pfam Ion channel 234 304 IPR013099 -
Cpe09g00642 386 Pfam Ion channel 113 193 IPR013099 -
Cpe09g00642 386 SUPERFAMILY EF-hand 323 384 IPR011992 -
Cpe09g00642 386 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 62 383 - -
Cpe09g00642 386 Gene3D - 209 312 - -
Cpe09g00642 386 SUPERFAMILY Voltage-gated potassium channels 224 323 - -
Cpe09g00642 386 PRINTS Two pore domain K+ channel signature 266 275 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cpe09g00642 386 PRINTS Two pore domain K+ channel signature 149 177 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cpe09g00642 386 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 62 383 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cpe09g00642 386 SUPERFAMILY Voltage-gated potassium channels 104 200 - -
Cpe09g00642 386 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Cpe09g00642 386 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00814 Cpe-Chr6:5207894 Cpe09g00642 Cpe-Chr9:4849942 4.90E-43 dispersed
Cpe09g00642 Cpe-Chr9:4849942 Cpe10g00104 Cpe-Chr10:697807 2.10E-47 dispersed
Cpe09g00642 Cpe-Chr9:4849942 Cpe02g00819 Cpe-Chr2:5237600 8.96E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00642 K05389 - csv:101214791 540.421