Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00664 ATGACGAGAAAGAAGGTGAAACTGACATTCATCACAAACGACGCAGCCAGAAAAGCCACTTTCAAGAAGAGGAAAAAGGGTTTCTTAAAGAAGCTCACTGAGCTGACCACCCTCTGTGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATTCCTACCCTGATCTATGGCCATCCCTTGTGGGCGTCCACAGTGTTATCTCTCACTTCAAGGCCCTGCCCGAGATGGATCAGTGCAAGAAGATGGTGAACCAAGACACCTTCCTCCGCCACCGCATTGCCAAGGCTGCCGACCAGCTCAAGAAGTTGCAGAGGGACAATCGCGAGAAGGAGATCGCCCATCTCATGTTTCAGAGCCTTCTCGCCGGTGGGGCTCCACGCCCTACTTTGAATGTCATTGATTTGAATGATCTTGGGTGGCTGGTTGATCAGAAGATGGCGGATATTTCCAAAAGGATTGAGCTTCTTAGCTCCGCGGTGGCTGTGGAACACAACCAACCGCCGTGTGTGGCGACGGTGGAGCCGTCGTGGTTTATAGAGATGGTGAATCAAGAATATGATGATCAAATGAGATTCGATATTGGGGATGATGTCATTCAGCTTCCTACTTTTGGGGAGGATGGTTGGCCAAATAATGCATTTTTCCCTTCAAACTAA 660 49.85 MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPSLVGVHSVISHFKALPEMDQCKKMVNQDTFLRHRIAKAADQLKKLQRDNREKEIAHLMFQSLLAGGAPRPTLNVIDLNDLGWLVDQKMADISKRIELLSSAVAVEHNQPPCVATVEPSWFIEMVNQEYDDQMRFDIGDDVIQLPTFGEDGWPNNAFFPSN 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5459370 5460029 - Cp4.1LG09g06630.1 Cpe09g00664 475030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00664 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe09g00664 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cpe09g00664 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 171 - -
Cpe09g00664 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe09g00664 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe09g00664 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe09g00664 219 Coils Coil 94 114 - -
Cpe09g00664 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 - -
Cpe09g00664 219 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Cpe09g00664 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cpe09g00664 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cpe09g00664 219 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00664 Cpe-Chr9:5459370 Cpe20g00649 Cpe-Chr20:4126525 5.21E-97 dispersed
Cpe09g00664 Cpe-Chr9:5459370 Cpe10g00528 Cpe-Chr10:3096610 4.56E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50011 PF00319 SRF-TF 3.60E-16 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00664 - - csv:101219796 287.345