Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00678 ATGGGAGATAGCCAGTACTCCTTTTCTCTCACCACTTTCAGTCCTTCGGGAAAGCTTGTGCAGATCGAGCACGCCTTGACAGCGGTTGGATCTGGTCAGACATCACTCGGTATCAAAGCTGCCAATGGTGTTGTCATCGCAACTGAAAAGAAACTACCGTCTATTTTGGTTGATGAAACGTCTGTTCAAAAGATACAGTCTCTGACACCAAATATTGGAGTTGTTTACAGTGGCATGGGTCCCGATTTTAGAGTTCTGGTCAGAAAAAGTAGGAAGCAGGCAGAGCAATACCATAGACTGTACAAGGAACCAATTCCAGTCACTCAACTTGTGAGGGAAACAGCAGCTGTAATGCAGGAGTTCACCCAATCTGGAGGTGTAAGGCCCTTTGGAGTATCTCTTTTGGTTGCAGGGTTTGATGACAATGGTCCCCAATTATACCAGGTGGACCCATCCGGTTCATATTTCTCTTGGAAGGCCTCTGCAATGGGGAAGAATGTTTCTAACGCCAAAACCTTTCTAGAAAAAAGGTATACTGATGATATGGAGCTTGATGATGCTGTGCACACTGCTATCTTAACCTTGAAAGAGGGATTTGAAGGACAGATCTCAGGCAAAAACATTGAAATTGGAATAATTGGCACAGATAAGAAATTCAGAGTACTAACCCCTGCTGAGATTGATGATTATTTGGCTGAAGTAGAGTAA 708 43.79 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISGKNIEIGIIGTDKKFRVLTPAEIDDYLAEVE 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5822944 5828420 - Cp4.1LG09g06790.1 Cpe09g00678 475044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00678 235 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 234 IPR029055 -
Cpe09g00678 235 CDD proteasome_alpha_type_2 6 232 - -
Cpe09g00678 235 PANTHER PROTEASOME ENDOPEPTIDASE COMPLEX 1 235 IPR034644 GO:0019773
Cpe09g00678 235 Pfam Proteasome subunit 31 213 IPR001353 GO:0005839|GO:0051603
Cpe09g00678 235 ProSiteProfiles Proteasome alpha-type subunit profile. 21 231 IPR023332 -
Cpe09g00678 235 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Cpe09g00678 235 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Cpe09g00678 235 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 235 - -
Cpe09g00678 235 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 235 IPR029055 -
Cpe09g00678 235 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00678 K02726 PSMA2; 20S proteasome subunit alpha 2 [EC:3.4.25.1] - zju:107419709 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01010 Cpe-Chr3:8264222 Cpe09g00678 Cpe-Chr9:5822944 4.14E-31 dispersed
Cpe09g00678 Cpe-Chr9:5822944 Cpe20g00617 Cpe-Chr20:3819030 1.33E-174 dispersed
Cpe12g00577 Cpe-Chr12:5854802 Cpe09g00678 Cpe-Chr9:5822944 4.21E-43 dispersed
Cpe09g00678 Cpe-Chr9:5822944 Cpe09g00679 Cpe-Chr9:5837514 1.13E-43 tandem
Cpe20g00616 Cpe-Chr20:3812940 Cpe09g00678 Cpe-Chr9:5822944 1.11E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g171 Blo01g00909 . . . . . . . . Cmo18g00539 . Cma18g00561 . . . Cpe09g00678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002157 3 3 1 2 3 2 2 2 2 2 2 2 2 2 2 3 2 3 3 2 1 1 1 1 2 1 2 2 1 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00678 Cpe_Chr09 FPKM 11.713544 12.755791 9.597234 8.381116 8.911841 9.669253 9.330415 10.504344 10.358063 10.771652