Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00689 GTGTACAGCAAGTTGAAGAAAGATAACCGAAGTGTACAGCAATTCACACGAATGGCTGCAAAAGATTTAGAGACAGTCTTGGATGTGCAGTCGGTTGTCGAAGCAGTAGTTACAGACCAAGACGTCGATGTTCCAAGTTACGAAGTAGAAAGCCTCTGCATGCGCTGTGGAGAAAACATGCTTAATCGTCAAGTGGTGAAATCTGAATCTGCGATTATTAAGATCCCTGAATTGGACTTCGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACAGCATGCAAAAAGAGTTTCTACCCGATCTTTACTATAGATATGCATCCGGCTCCAAGCAAAAATTGGGATTATTTTAGTTTCAATTACTTGGATTCCTCGGGTGGCAAGCGCAAAGTGACAGAGGTAGCTCTAATAGCTTCCCAAATGACATTTATACTAATTCTTGTGCATCGTAAGACCATCATCTTCAAGTTTCAATTACTTGGATTCCTCGGGTGGCAAGCGCAAAGAGCATATGGAAAAGTGGCTCCTCTCGGGTTGGCTCATCGATTCTCAGCTCAGCTTCGTGGCTCCGTTGGCTCGTCTTTGCGGCTCGCATCGGCTCAGCTTCTCGACTTAGTTCTTGATTTTTCTTGTCCAATGATGCAAACTGGGCCTCACCACGCAGCAGAAGAAGATGCCCTTCGCGAGGAAAATAACAAGCTCATAATTTATCCGAGAGGTTTTAATATCACATGGGGCAATGATGATCGTTATTGGCGTATTGTCAACTCCGACGAAGTGGCCGAGCTGAAGCAAGTTTCATGGCTTGAAGTGACATGCTCAACTGATAAAGTAGAGTTTGGAAAGAGGTACAAAGTGGGTTTCAATGTTTTACTAAGGCCAGATGCATTTGGATGGAAAGGGCTTGATGTTTATGTAATGGCTAAGGTTGGGAAGGCAGGAAAGTTCTTCCCTAAGAAAGTGTCTCTTGGAGACGACCACCCAAAGCAAAAGTTTATCATTCCTAAGACGCCTTTAGTAATCTCAATTGATCGTTCAACAGCCAAAGAGAAAAGCATCCACCTTGGGTTGTATGAAGTTTGGAGTTCAAAGTGGAAGGGGGGATTGGAGATCCACAATGCATTCATTGAGAAG 1137 44.06 VYSKLKKDNRSVQQFTRMAAKDLETVLDVQSVVEAVVTDQDVDVPSYEVESLCMRCGENMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTACKKSFYPIFTIDMHPAPSKNWDYFSFNYLDSSGGKRKVTEVALIASQMTFILILVHRKTIIFKFQLLGFLGWQAQRAYGKVAPLGLAHRFSAQLRGSVGSSLRLASAQLLDLVLDFSCPMMQTGPHHAAEEDALREENNKLIIYPRGFNITWGNDDRYWRIVNSDEVAELKQVSWLEVTCSTDKVEFGKRYKVGFNVLLRPDAFGWKGLDVYVMAKVGKAGKFFPKKVSLGDDHPKQKFIIPKTPLVISIDRSTAKEKSIHLGLYEVWSSKWKGGLEIHNAFIEK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6041769 6070859 - Cp4.1LG09g06890.1 Cpe09g00689 475055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00689 379 Pfam ZPR1 zinc-finger domain 58 93 IPR004457 GO:0008270
Cpe09g00689 379 Pfam Phloem protein 2 235 377 IPR025886 -
Cpe09g00689 379 SMART zpr1 51 151 IPR004457 GO:0008270
Cpe09g00689 379 PANTHER PROTEIN PHLOEM PROTEIN 2-LIKE A9 224 377 - -
Cpe09g00689 379 Gene3D ZPR1, A/B domain 56 95 IPR042451 -
Cpe09g00689 379 PANTHER - 224 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00683 Cpe-Chr9:5975946 Cpe09g00689 Cpe-Chr9:6041769 1.47E-17 dispersed
Cpe09g00687 Cpe-Chr9:6021190 Cpe09g00689 Cpe-Chr9:6041769 2.93E-61 dispersed
Cpe09g00689 Cpe-Chr9:6041769 Cpe20g00612 Cpe-Chr20:3789564 2.80E-43 dispersed
Cpe09g00688 Cpe-Chr9:6026599 Cpe09g00689 Cpe-Chr9:6041769 1.95E-08 tandem
Cpe10g00009 Cpe-Chr10:42956 Cpe09g00689 Cpe-Chr9:6041769 6.41E-28 transposed
Cpe20g00609 Cpe-Chr20:3753664 Cpe09g00689 Cpe-Chr9:6041769 7.18E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00689 - - csv:101222726 200.675