Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00689 GTGTACAGCAAGTTGAAGAAAGATAACCGAAGTGTACAGCAATTCACACGAATGGCTGCAAAAGATTTAGAGACAGTCTTGGATGTGCAGTCGGTTGTCGAAGCAGTAGTTACAGACCAAGACGTCGATGTTCCAAGTTACGAAGTAGAAAGCCTCTGCATGCGCTGTGGAGAAAACATGCTTAATCGTCAAGTGGTGAAATCTGAATCTGCGATTATTAAGATCCCTGAATTGGACTTCGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACAGCATGCAAAAAGAGTTTCTACCCGATCTTTACTATAGATATGCATCCGGCTCCAAGCAAAAATTGGGATTATTTTAGTTTCAATTACTTGGATTCCTCGGGTGGCAAGCGCAAAGTGACAGAGGTAGCTCTAATAGCTTCCCAAATGACATTTATACTAATTCTTGTGCATCGTAAGACCATCATCTTCAAGTTTCAATTACTTGGATTCCTCGGGTGGCAAGCGCAAAGAGCATATGGAAAAGTGGCTCCTCTCGGGTTGGCTCATCGATTCTCAGCTCAGCTTCGTGGCTCCGTTGGCTCGTCTTTGCGGCTCGCATCGGCTCAGCTTCTCGACTTAGTTCTTGATTTTTCTTGTCCAATGATGCAAACTGGGCCTCACCACGCAGCAGAAGAAGATGCCCTTCGCGAGGAAAATAACAAGCTCATAATTTATCCGAGAGGTTTTAATATCACATGGGGCAATGATGATCGTTATTGGCGTATTGTCAACTCCGACGAAGTGGCCGAGCTGAAGCAAGTTTCATGGCTTGAAGTGACATGCTCAACTGATAAAGTAGAGTTTGGAAAGAGGTACAAAGTGGGTTTCAATGTTTTACTAAGGCCAGATGCATTTGGATGGAAAGGGCTTGATGTTTATGTAATGGCTAAGGTTGGGAAGGCAGGAAAGTTCTTCCCTAAGAAAGTGTCTCTTGGAGACGACCACCCAAAGCAAAAGTTTATCATTCCTAAGACGCCTTTAGTAATCTCAATTGATCGTTCAACAGCCAAAGAGAAAAGCATCCACCTTGGGTTGTATGAAGTTTGGAGTTCAAAGTGGAAGGGGGGATTGGAGATCCACAATGCATTCATTGAGAAG 1137 44.06 VYSKLKKDNRSVQQFTRMAAKDLETVLDVQSVVEAVVTDQDVDVPSYEVESLCMRCGENMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTACKKSFYPIFTIDMHPAPSKNWDYFSFNYLDSSGGKRKVTEVALIASQMTFILILVHRKTIIFKFQLLGFLGWQAQRAYGKVAPLGLAHRFSAQLRGSVGSSLRLASAQLLDLVLDFSCPMMQTGPHHAAEEDALREENNKLIIYPRGFNITWGNDDRYWRIVNSDEVAELKQVSWLEVTCSTDKVEFGKRYKVGFNVLLRPDAFGWKGLDVYVMAKVGKAGKFFPKKVSLGDDHPKQKFIIPKTPLVISIDRSTAKEKSIHLGLYEVWSSKWKGGLEIHNAFIEK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6041769 6070859 - Cp4.1LG09g06890.1 Cpe09g00689 475055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00689 379 Pfam ZPR1 zinc-finger domain 58 93 IPR004457 GO:0008270
Cpe09g00689 379 Pfam Phloem protein 2 235 377 IPR025886 -
Cpe09g00689 379 SMART zpr1 51 151 IPR004457 GO:0008270
Cpe09g00689 379 PANTHER PROTEIN PHLOEM PROTEIN 2-LIKE A9 224 377 - -
Cpe09g00689 379 Gene3D ZPR1, A/B domain 56 95 IPR042451 -
Cpe09g00689 379 PANTHER - 224 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00689 - - - csv:101222726 200.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00683 Cpe-Chr9:5975946 Cpe09g00689 Cpe-Chr9:6041769 1.47E-17 dispersed
Cpe09g00687 Cpe-Chr9:6021190 Cpe09g00689 Cpe-Chr9:6041769 2.93E-61 dispersed
Cpe09g00689 Cpe-Chr9:6041769 Cpe20g00612 Cpe-Chr20:3789564 2.80E-43 dispersed
Cpe09g00688 Cpe-Chr9:6026599 Cpe09g00689 Cpe-Chr9:6041769 1.95E-08 tandem
Cpe10g00009 Cpe-Chr10:42956 Cpe09g00689 Cpe-Chr9:6041769 6.41E-28 transposed
Cpe20g00609 Cpe-Chr20:3753664 Cpe09g00689 Cpe-Chr9:6041769 7.18E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g153 . . . . . . . . . Cmo18g00529 . Cma18g00549 . . . Cpe09g00689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00923 Cam01g0951 Cec01g0954 Cco01g0992 Clacu01g0952 Cmu01g0910 Cre01g0842 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000268 1 5 1 1 1 6 6 6 6 4 6 6 4 4 6 4 6 2 6 6 5 5 5 7 10 5 4 9 8 3 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00689 Cpe_Chr09 FPKM 10.935246 12.479972 6.380091 5.524604 8.890164 8.720437 8.907326 6.69548 6.102531 5.858881