Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00690 ATGGCGCAGAAATCTCTGATCTACACTTTTGTCGCTCGCGGAACCGTGATTCTCGCTGAGTACACCGAGTATAGTGGGAATTTCAATTCCATTGCTTTTCAATGCCTCCAGAAATTGCCCTCTGCTAATAACAAATTCACCTATAATTGCGATGGCCACACCTTCAATTATCTCGTCGACAACGGTTACACATACTGTGTCGTTGCAACTGAATCAGCTGGAAGACAAGTGCCAATTGCATTTTTGGAGCGTATTAAGGATGATTTCGTGTCGAAGTATGGTGGGGGAAAGGCTGCCACAGCTCCTGCCAATAGTCTTAACAAGGAATTTAGGTCAAAGCTGAAGGAACATATGCAGTACTGTGTTGATAATCCTGAAGAGATTAGCAAGCTTGCAAAGGTGAAAGCTCAGGTTTCAGAAGTGAAAGGTGTTATGATGGAAAATATTGAAAAGGTTCTTGACAGAGGAGAGAAAATAGAACTTCTAGTAGATAAGACCGAAAACCTTCATAACCAGGCACAAGACTTCAAGACGAGTGGAACGAAAATTCGAAGGAAAATGTGGCTACAAAATATGAAGATCAAGTTGATCGTTTTGGGGATTTTGATAGCTTTGATCCTTATCATAGTGCTTTCAGTTTGCCATGGCTTCAACTGTGGTGGAAAATGA 669 41.55 MAQKSLIYTFVARGTVILAEYTEYSGNFNSIAFQCLQKLPSANNKFTYNCDGHTFNYLVDNGYTYCVVATESAGRQVPIAFLERIKDDFVSKYGGGKAATAPANSLNKEFRSKLKEHMQYCVDNPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHNQAQDFKTSGTKIRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCGGK 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6077498 6085087 + Cp4.1LG09g06860.1 Cpe09g00690 475056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00690 222 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Cpe09g00690 222 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Cpe09g00690 222 CDD Longin 7 121 IPR010908 -
Cpe09g00690 222 Gene3D Longin domain 1 127 - -
Cpe09g00690 222 SMART Longin_2 31 113 IPR010908 -
Cpe09g00690 222 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Cpe09g00690 222 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Cpe09g00690 222 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Cpe09g00690 222 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Cpe09g00690 222 Pfam Synaptobrevin 129 215 IPR042855 -
Cpe09g00690 222 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Cpe09g00690 222 Gene3D - 128 214 - -
Cpe09g00690 222 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
Cpe09g00690 222 PANTHER SNARE PROTEINS 1 170 - -
Cpe09g00690 222 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 170 - -
Cpe09g00690 222 CDD R-SNARE 130 188 - -
Cpe09g00690 222 SUPERFAMILY SNARE fusion complex 124 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00690 Cpe-Chr9:6077498 Cpe15g00132 Cpe-Chr15:1057024 4.22E-128 dispersed
Cpe20g00607 Cpe-Chr20:3732126 Cpe09g00690 Cpe-Chr9:6077498 1.26E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00690 K08511 - csv:101221779 405.986