Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00704 ATGTTTGAATTTGTTATCCTTGTTGTTCGGGATCGTTCTTCCAAGAGCAGTCATAAAAGTGATCAGGTTGTTGAGATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCCCCGCCTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGGCATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGGTCTGATAAAAAATTTGGATTCAATTCGGGACCAGACTTCACACTCAAGGAATTCCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATATCAAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAATACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATTTCTGGAGTCCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTGGAAGCTGCAATGAAAAAACATTTGCCCGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCCAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCCGAGGCTGTGAATGTGGCACCGGTGGACTGGTTGATTCATGGGCAAAATGCTATTGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAATTGTTAATGGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGGACTCCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTAAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAAAGAGAGTGTTACGCCTGCTTCTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCTTGTCCAGTAGACGACAGGTGTGTTCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCGAGATACTGTGAAATGGGAAACGACAATGGATCTGTAGCTAAGAGTTTGGTGTTTGAAGAAAAGGACGTTTGTAAAGCAGCACATGAAGAAAAAGACACCGCCATGTTCTTGGAATTTGGTTTTAGAAGCCGAGAGAAATTCTTTAGTGTGCGTAATCCAACTAATATTGTTACCTGCACGTCAGATGTTCTTGATGATGGCCTCCTGGGACCTCTATTCAAGGTGAGCTTGGAAGAATCTCCCCGTGAAAGTGGATTGCTTTTTACAAGTGGATCATCAGGTATATCATTGAGTACCCACCAAGGCTAA 2061 42.75 MFEFVILVVRDRSSKSSHKSDQVVEMLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPPSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGASVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAQEDLNFDIKSSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLMGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMGNDNGSVAKSLVFEEKDVCKAAHEEKDTAMFLEFGFRSREKFFSVRNPTNIVTCTSDVLDDGLLGPLFKVSLEESPRESGLLFTSGSSGISLSTHQG 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6265837 6272794 + Cp4.1LG09g07010.1 Cpe09g00704 475070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE 615 668 - -
Cpe09g00704 686 MobiDBLite consensus disorder prediction 141 160 - -
Cpe09g00704 686 MobiDBLite consensus disorder prediction 118 160 - -
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 608 - -
Cpe09g00704 686 MobiDBLite consensus disorder prediction 124 140 - -
Cpe09g00704 686 Pfam jmjN domain 53 86 IPR003349 -
Cpe09g00704 686 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Cpe09g00704 686 ProSiteProfiles JmjC domain profile. 260 426 IPR003347 -
Cpe09g00704 686 Pfam C5HC2 zinc finger 516 567 IPR004198 -
Cpe09g00704 686 SMART JmjN_1 51 92 IPR003349 -
Cpe09g00704 686 SUPERFAMILY Clavaminate synthase-like 231 454 - -
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 615 668 - -
Cpe09g00704 686 Pfam JmjC domain, hydroxylase 293 409 IPR003347 -
Cpe09g00704 686 SMART cupin_9 260 426 IPR003347 -
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 12 608 - -
Cpe09g00704 686 Gene3D Cupin 37 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00704 - - - cmax:111489928 1198.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00704 Cpe20g00587 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00704 Cpe-Chr9:6265837 Cpe11g00682 Cpe-Chr11:4718880 0 dispersed
Cpe13g00159 Cpe-Chr13:1169524 Cpe09g00704 Cpe-Chr9:6265837 3.25E-12 transposed
Cpe20g00587 Cpe-Chr20:3572938 Cpe09g00704 Cpe-Chr9:6265837 5.24E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00798 . 1 1179 JUMONJI Transcription Factor Family AT1G08620 52.1 0.0e+00 1191.4
Cpe09g00704 CCT 34 583 JUMONJI Transcription Factor Family AT1G08620 59.4 1.6e-188 657.5
Cpe09g00704 CCT 21 668 JUMONJI Transcription Factor Family AT1G30810 56.7 2.4e-212 736.1
Cpe09g00704 CCT 29 668 JUMONJI Transcription Factor Family AT2G34880 50.9 2.4e-188 656.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50013 PF02373 JmjC 1.80E-43 CL0029 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00704 Cpe_Chr09 FPKM 0.0 0.0 3.933432 3.66072 4.896732 5.180248 4.970677 0.888004 0.661113 0.857679