Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00704 ATGTTTGAATTTGTTATCCTTGTTGTTCGGGATCGTTCTTCCAAGAGCAGTCATAAAAGTGATCAGGTTGTTGAGATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCCCCGCCTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGGCATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGGTCTGATAAAAAATTTGGATTCAATTCGGGACCAGACTTCACACTCAAGGAATTCCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATATCAAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAATACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATTTCTGGAGTCCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTGGAAGCTGCAATGAAAAAACATTTGCCCGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCCAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCCGAGGCTGTGAATGTGGCACCGGTGGACTGGTTGATTCATGGGCAAAATGCTATTGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAATTGTTAATGGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGGACTCCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTAAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAAAGAGAGTGTTACGCCTGCTTCTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCTTGTCCAGTAGACGACAGGTGTGTTCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCGAGATACTGTGAAATGGGAAACGACAATGGATCTGTAGCTAAGAGTTTGGTGTTTGAAGAAAAGGACGTTTGTAAAGCAGCACATGAAGAAAAAGACACCGCCATGTTCTTGGAATTTGGTTTTAGAAGCCGAGAGAAATTCTTTAGTGTGCGTAATCCAACTAATATTGTTACCTGCACGTCAGATGTTCTTGATGATGGCCTCCTGGGACCTCTATTCAAGGTGAGCTTGGAAGAATCTCCCCGTGAAAGTGGATTGCTTTTTACAAGTGGATCATCAGGTATATCATTGAGTACCCACCAAGGCTAA 2061 42.75 MFEFVILVVRDRSSKSSHKSDQVVEMLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPPSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGASVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAQEDLNFDIKSSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLMGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMGNDNGSVAKSLVFEEKDVCKAAHEEKDTAMFLEFGFRSREKFFSVRNPTNIVTCTSDVLDDGLLGPLFKVSLEESPRESGLLFTSGSSGISLSTHQG 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6265837 6272794 + Cp4.1LG09g07010.1 Cpe09g00704 475070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE 615 668 - -
Cpe09g00704 686 MobiDBLite consensus disorder prediction 141 160 - -
Cpe09g00704 686 MobiDBLite consensus disorder prediction 118 160 - -
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 608 - -
Cpe09g00704 686 MobiDBLite consensus disorder prediction 124 140 - -
Cpe09g00704 686 Pfam jmjN domain 53 86 IPR003349 -
Cpe09g00704 686 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Cpe09g00704 686 ProSiteProfiles JmjC domain profile. 260 426 IPR003347 -
Cpe09g00704 686 Pfam C5HC2 zinc finger 516 567 IPR004198 -
Cpe09g00704 686 SMART JmjN_1 51 92 IPR003349 -
Cpe09g00704 686 SUPERFAMILY Clavaminate synthase-like 231 454 - -
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 615 668 - -
Cpe09g00704 686 Pfam JmjC domain, hydroxylase 293 409 IPR003347 -
Cpe09g00704 686 SMART cupin_9 260 426 IPR003347 -
Cpe09g00704 686 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 12 608 - -
Cpe09g00704 686 Gene3D Cupin 37 410 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00704 Cpe20g00587 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00704 Cpe-Chr9:6265837 Cpe11g00682 Cpe-Chr11:4718880 0 dispersed
Cpe13g00159 Cpe-Chr13:1169524 Cpe09g00704 Cpe-Chr9:6265837 3.25E-12 transposed
Cpe20g00587 Cpe-Chr20:3572938 Cpe09g00704 Cpe-Chr9:6265837 5.24E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50013 PF02373 JmjC 1.80E-43 CL0029 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00704 - - cmax:111489928 1198.73