Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00719 ATGGCCAGTTCTGCTTGTATATTGGCTATTTCATTACTAGCATTAGTTGTCTTTATTGCCTTGGCATCTGATCAGAGTCCTATTCAAGATTTCTGTGTAGCAAATAATGGAAGTACAGTTTTACTAAATGGACTAACCTGCAAGGACCCAAAGGAAGTTGTAGCCGATGACTTTTCCTTCAGCGGACTTCACCTTGCAGCTAACACATCAAATGCACTGGGGTGTCATGTGACTCCAGTTACTCCATCAGAAATGCCAGGACTCAACACTCTTGGCCTCTCCATTGTTAGAATAGACTATGCACCACAAGGCATCAACCCTCTACACACACATCCTCGAGCTTCCGAGATATTGATTGTCTTGGAAGGCAGCTTAGAAGTCGGATTCATCACATCATTTCCTGAAAATCGACATATAGGGAAAGTGTTACAAAAGGGAGATGCATTTGTCTTCCCTGTTGGTCTTGTTCACTACCAGAGAAATCCAGGTCCTACCAATGCAGTTGCTATTGCTGCTCTTAGCAGCCAGAACCCTGGAGTGATTATAGTTGCAAATGCAGTATTTGGGTCTATTCCAAATATTTCCAGTAACATTCTAGAGAAATCTTTTCAAATCAATAAAAAGGCTATTGGCTACCTTCAAACTAAGTTCTAG 654 41.59 MASSACILAISLLALVVFIALASDQSPIQDFCVANNGSTVLLNGLTCKDPKEVVADDFSFSGLHLAANTSNALGCHVTPVTPSEMPGLNTLGLSIVRIDYAPQGINPLHTHPRASEILIVLEGSLEVGFITSFPENRHIGKVLQKGDAFVFPVGLVHYQRNPGPTNAVAIAALSSQNPGVIIVANAVFGSIPNISSNILEKSFQINKKAIGYLQTKF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6540961 6543296 + Cp4.1LG09g07140.1 Cpe09g00719 475085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00719 217 SMART Cupin_1_3 61 211 IPR006045 -
Cpe09g00719 217 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
Cpe09g00719 217 Gene3D Jelly Rolls 23 217 IPR014710 -
Cpe09g00719 217 Pfam Cupin 65 208 IPR006045 -
Cpe09g00719 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 217 - -
Cpe09g00719 217 CDD cupin_OxOx 24 217 - -
Cpe09g00719 217 PANTHER GERMIN-LIKE PROTEIN 5 217 - -
Cpe09g00719 217 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Cpe09g00719 217 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Cpe09g00719 217 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Cpe09g00719 217 SUPERFAMILY RmlC-like cupins 24 216 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00719 Cpe-Chr9:6540961 Cpe20g00572 Cpe-Chr20:3422106 4.45E-145 dispersed
Cpe10g00044 Cpe-Chr10:304230 Cpe09g00719 Cpe-Chr9:6540961 4.42E-88 wgd
Cpe19g01178 Cpe-Chr19:7920864 Cpe09g00719 Cpe-Chr9:6540961 8.73E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00719 - - bhj:120082893 382.104