Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00726 ATGAGTCATTTTTCAGGGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCTGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTGTATGCTTAAAATGTAGTGGTGTACACAGAAACCTTGGAACACATATATCAAAGGTTTTATCAATAACATTGGATGAATGGACTGATGATGAGATTGATGCCATGATGGAGGTTGGAGGAAATGGTTTTGCGAATTCAATATATGAGGCTTTTATTCCTGATGGATATACAAAGCCTGGACCGAGTGCTAGCCATGAGGAGCGTTCAAAGTTCATAAAGTCCAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTATACCCAATAACTCCTCAAAGACTCCTGAGGCACCAAGTTGTTTTCAGAACTCTTCCAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGACTACTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATATGAAATCCAGTGATCCTTTCATTACCGTGACTCTTGGGCAACAGCATTCTGAATGTCCTACTCTGAACCTGTTAACATGCTCAAAGATAGAAGACTGCGAAAACGACGGTGAAAAAGAAAAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAAGAATACGGTCCCTTAGAGTTGAAATCGACCTCCAGCCAATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATATATGGGGATATGCAGATAGGAAAATGGTTGAAATCAGACGACAACGCCCTTATCGACGACAGTGCAGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCGCTCAAGCTCGGAAACGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAGTAG 972 40.84 MSHFSGDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFVCLKCSGVHRNLGTHISKVLSITLDEWTDDEIDAMMEVGGNGFANSIYEAFIPDGYTKPGPSASHEERSKFIKSKYELQEFLKPSLRIIPNNSSKTPEAPSCFQNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITVTLGQQHSECPTLNLLTCSKIEDCENDGEKEKLESSLERGTHAVGSSRIRSLRVEIDLQPMLTSAMAFGDAEIYGDMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLGNVESGEVYLELEWMPLDQ 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6673279 6676597 - Cp4.1LG09g07320.1 Cpe09g00726 475092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00726 323 CDD ArfGap 18 124 - -
Cpe09g00726 323 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cpe09g00726 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 323 IPR044518 GO:0005096|GO:0005543
Cpe09g00726 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 323 - -
Cpe09g00726 323 Gene3D Arf GTPase activating protein 5 135 IPR038508 -
Cpe09g00726 323 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cpe09g00726 323 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cpe09g00726 323 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cpe09g00726 323 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cpe09g00726 323 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 166 200 IPR035892 -
Cpe09g00726 323 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096
Cpe09g00726 323 SMART arf_gap_3 15 137 IPR001164 GO:0005096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00726 Cpe20g00562 CCT
Cpe09g00726 Cpe19g01173 CCT
Cpe09g00726 Cpe10g00050 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00726 Cpe-Chr9:6673279 Cpe13g00490 Cpe-Chr13:5053254 2.34E-83 dispersed
Cpe10g00050 Cpe-Chr10:333098 Cpe09g00726 Cpe-Chr9:6673279 3.60E-135 wgd
Cpe19g01173 Cpe-Chr19:7898767 Cpe09g00726 Cpe-Chr9:6673279 8.15E-138 wgd
Cpe20g00562 Cpe-Chr20:3336764 Cpe09g00726 Cpe-Chr9:6673279 1.72E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00726 K12486 - csv:101211569 463.381