Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00742 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGGCTCCTGAAGGTGAGAGGAGGGTCCTGAATTCTGAGCTTTGGCATGCGTGTGCGGGTCCTCTTGTTTCTCTTCCGGCTGTTGGGAGTCGGGTTGTTTATTTTCCTCAAGGACATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTGGATACTCAGATCCCAAATTACCCAAGTTTACCGCCACAGCTCATCTGTCAACTTCACAACTTGACAATGCATGCGGATGCTGACACTGATGAAGTATACGCTCAGATGACTTTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACAAATTACTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGGGGGTTTTCGGTTCCTCGCCGTGCTGCTGAAAAAGTATTTCCTCCTTTGGACTTCTCCATGCAGCCTCCAGCCCAAGAGCTGATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATATTTCGTGGAATGAAAAGAACCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGAATGAAAAGAACCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCAGCCCATGCAGCTGCTACCAATAGTCGGTTTACCATATTCTTTAACCCGAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTCGGGATGCGCTTTCGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGAACGATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAATTCGCATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCGTTGTGGGAAATCGAACCATTAACAACATTTCCAATGTATCCATCACCGTTTCCACTTCGACTGAAGCGACAATGGCCAACCGGACTGCCTTCGTTTGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAACAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAAATGGGGTCTCACCATGGATGCATCCGAGGCTTGATCCATCCATGGTCGGTATGCAATCCGACGTGTATCAAGCCATGGCTGCTGCAGCGCTTCAGGAGATGAGAGCGATCGATTATTCCAAACTAGCGCCTGCATCGATGCTGCAATTTCAGCAGCCTCAAGGTCTCCCTTGTCAGCCTTCAACTTTAATGCAGCCTCAGATGTTGCATCAGTCTCAATCTCAGCACGCGTTTCTGCAATCCGTTCAAGAACATCAGCAGCATTCTCAGTCCCAAACTCAAACTCAGTCACATCACCTTCAGCCACAATTGCAGCCTGAGCCGTCATTCAATAATCAACAACCGCAGCATCAACAGCAACCAAGACAGCCACAGCCACAGCCACCACCACAGCCACAGCCACAGCCACTGGTTGATCATCAACCGATTCCTTGTACAATCCCTGCTATATCTCAGTTCGCTTCATGTTCACAATCCCAATCACCGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCCGATTCCAATGGTAACCCTGTAACCAGTCCTACTGTTTCCCCATTCCATAGTCTTGCAGGGTCATTTGTCCAAGACGAATCGTCTCAGCTGCTTAACATTCAACGAGCAAATTCAGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGGTCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCAGTACTTTCTTCCTCAAGTAGAAAGTGGTATGTCTCAGAATACGGTTGCATTGCCACCCTTCCCCGGAAGGGAGTGTGCTATCGGTGATCGAGATGAGGGTTCAGATCCAGAAAACCATGTTCTATTTGGTGTGAACATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCGAACCTTAGGGGAGTCGGCAACGATAATGTTTCCACAACACTACCTTTTTCTTCCAACTACATGAGCTCATCCGGTACCGATTTTTCCGTAAATCCAACGACAAATTGCATCGACGAATCGGGTTTCTTGCAGCCTCATGAAAACGTGGGCCAAGTAAACCAACCAAATGGAACTTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCCTTAGATATAACAAAATTCAACAACTACCTCGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAACGACGTTCTTCTCCTTGGGGATGGCCCGTGGCCGGAGTTCGTAAACAGTGTATGGTGTATCAAAATACTTTCACCCGACGAAGTTCAGGAAATGGGGAAGCGCGGTTTAGAACTTCTCAACTCTATGCCAATCCAGAGGCTTTCGAACAATACCTGTGACGACTATGGTAGCCGACAGGACTCGAGAAATTTGATATCAGGGATAACCTCCGTCGGTCCTTTCGACTACTGA 2673 48.45 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDTQIPNYPSLPPQLICQLHNLTMHADADTDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGMKRTNYSSESGVQVDRKPNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRQWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGNGVSPWMHPRLDPSMVGMQSDVYQAMAAAALQEMRAIDYSKLAPASMLQFQQPQGLPCQPSTLMQPQMLHQSQSQHAFLQSVQEHQQHSQSQTQTQSHHLQPQLQPEPSFNNQQPQHQQQPRQPQPQPPPQPQPQPLVDHQPIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPFHSLAGSFVQDESSQLLNIQRANSVIPSAGWPSKRSAIDPLSTGASQYFLPQVESGMSQNTVALPPFPGRECAIGDRDEGSDPENHVLFGVNIESSSLLMQNGMSNLRGVGNDNVSTTLPFSSNYMSSSGTDFSVNPTTNCIDESGFLQPHENVGQVNQPNGTFVKVHKSGTYSRSLDITKFNNYLELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPDEVQEMGKRGLELLNSMPIQRLSNNTCDDYGSRQDSRNLISGITSVGPFDY 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6895319 6904285 + Cp4.1LG09g07430.1 Cpe09g00742 475108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00742 890 MobiDBLite consensus disorder prediction 525 545 - -
Cpe09g00742 890 MobiDBLite consensus disorder prediction 567 588 - -
Cpe09g00742 890 PANTHER AUXIN RESPONSE FACTOR 6 1 869 - -
Cpe09g00742 890 Pfam Auxin response factor 241 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe09g00742 890 Gene3D - 753 846 - -
Cpe09g00742 890 Gene3D - 279 351 - -
Cpe09g00742 890 MobiDBLite consensus disorder prediction 471 547 - -
Cpe09g00742 890 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 869 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe09g00742 890 CDD B3_DNA 126 191 IPR003340 GO:0003677
Cpe09g00742 890 Gene3D - 125 215 IPR015300 -
Cpe09g00742 890 SUPERFAMILY CAD & PB1 domains 746 832 - -
Cpe09g00742 890 SMART B3_2 127 217 IPR003340 GO:0003677
Cpe09g00742 890 ProSiteProfiles PB1 domain profile. 757 841 IPR000270 GO:0005515
Cpe09g00742 890 SUPERFAMILY DNA-binding pseudobarrel domain 112 244 IPR015300 -
Cpe09g00742 890 Pfam AUX/IAA family 750 846 IPR033389 -
Cpe09g00742 890 MobiDBLite consensus disorder prediction 471 524 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00742 Cpe19g01157 CCT
Cpe09g00742 Cpe20g00545 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00742 Cpe-Chr9:6895319 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe10g00065 Cpe-Chr10:472288 Cpe09g00742 Cpe-Chr9:6895319 0 wgd
Cpe19g01157 Cpe-Chr19:7752738 Cpe09g00742 Cpe-Chr9:6895319 0 wgd
Cpe20g00544 Cpe-Chr20:3180981 Cpe09g00742 Cpe-Chr9:6895319 3.87E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50017 PF02309 AUX_IAA 1.10E-06 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00742 - - csv:101211705 1506.5