Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00775 ATGGAGAAGAATCGGAGCGGAGAAAGAGGAGCGATGGCGTTTTCGTCCTCGGCGGATAGCAATATGAGGGCTCGTCTGAGTAACACCACTAGCACCGGCAACAGAGCTGCCGCACTTGTGCAATACAATGCCGATGCTGGAATTATGAGCAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAATTATTCGAGGTCAGTTCTTGAAGCTAATGAATCTGTTCCCGAAGAACAAATTGCTGCTTATCTGTCTAGGATTCAGAGGGGTGGGCTGGTTCAATCGTTTGGTTGTTTGCTTGCGATTGATGAGTCTAGTTTTAAGATTATTAGCTATAGTGAGAACTGTTTTGAAATTTTGGGGTTACATGATGAATTTGAGTCGGCACAGGGGAAGGGATTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCAGCTTCTTTCAGGGAGATTTCGTTGTTGAATCCGGTTTGGGTCTATTCTAGGACTACTCAGAAGCCATTTTATGCTATATTGCATAGGATTGATGTGGGGATTGTGATTGATTTAGAGCCTACACGATCTTTTGATCCTGCATTGTCGCTTGCTGGCACGGTTCAGTCGCAGAAACTAGCGGTTCGGGCGATTTCTAGGCTGCAGGCTCTACCTGGTGGTGATATAGGTGTTCTATGTGACACGGTTGTGGAAGATGTGCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATATCTTGGTTTGCATTATCCTGCCATTGATATACCTCAAGCTGCTCGGTTTTTGTTCAAGCAAAACCGCATCAGGATGATTTGTGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCGCCCCATAGCTGTCATTTGCAGTACATGTCGAATATGGGTTCCTTAGCCTCGTTAGCGATGGCTGTAGTCATGAATAGTGATGACTCGCCAACACGGTTATGGGGCTTGGTAGTGTGCCACCATACTTCTCCGCGATATGTCCCTTTCCCACTTCGTTATGCTTGTGAGCTTCTCATCCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGTCATTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACATTCCTCTGCGACATGCTTCTTCGAGGCTCCCCATGTGCATTGCTGATGCAGTCTCCTAGTATAATGGATCTTGTGAAGTGTGAGGGTGCAGCATTGTATTATAATGGGGCATGTTGTTTACTTGGTATAACTCCGACTGAAGCACAAGTCAAAGATCTTGTAGAATGGGTACTTACTAACCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCCGAAGCTGCTTCTCTAGGTGATGCAGTGTGTGGTATGGCAGCTGCAAGAATTAGTTCCAAGGATTTCTTATTCTGGTTCAGGTCTCAGGCAGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCGGATATTAAGGACGATGGTGGAAAACTGCACCCAAGATCATCATTTAAAGCGTTTCTTGAAGTTGCGAAGAGTAGAAGTTTACCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCGTTGCAGCTTATTATGAGGGAGTCTTTTTCTAACACTAGGGACAGTGATTCAAAGGTAGAAGCTTCTGCCCAGCCGAGTGACACTGTAATCCAGGATATCGACGAACTCAGTTCAGCAGCTTGCGAAATGGTGAGGTTGATTGAAACAGCAACTGTTCCAATTTTTGGGGTTGATTCAACTGGTGTGATCAATGGATGGAATGCTAAAATTTCTGAACTCGTAGGATTACAAACTAGTGAAGCTTTGGGCAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTTGGAGATTTACTTTCCCATGCTCTTCAAGGTAAGGAAGACAACAATGTGGAGTTAAAACTGAGAAGTTTTCGATCTGATAAAGAAAAGTCTACCATTTATATTGTCGTTAATGCTTGCACAAGTAGGGATTACACAAACAAAATTGTCGGGGTTTGCTTTGTCGGGAAAGATGTTACGCCCGAGAAAGGTGTGATGGATAAATTTATACGTCTGCAGGGAGATTATAAGGCTATTATTGAAAGTTTGAGTCCATTGATCCCACCGATATTTGCTTCGGACGTGAACGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAGCTTTCTGGTTGGAGAAAAGATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATCTTTGGAAATTTTTGTAGGTTGAAAGGTCTAGATACGCTCACTAGTTTTATGATCCTTTTATATCAAGGTATCGACGGTCAAGAAACCGAGAAGTTTCCGTTAGGATTTTTCAATAAGGATGGGAACTATGAGGAGGTTCTTTTAACATCAAACAAAAGAACTGATGCAGAAGGTAACATCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTGCATGGGGTCTCTGAAGGACTTGGTGTGGGCGACAGAGAGGGAAATCTGCAGCTTAAGGAGTTGACTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATTAGATTTACTCATGAACTTCTTGTAAATTCAGGCATTACAGAAAACCAGAAGCTCTTTCTCGATACCAGTGGCGCATGCGAGAGACAAATCATGACGATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCAAGTAGAGATAAACAGAGAAGAATTTATCCTCGGGAGTGTGCTGGACGCCATTATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAGATTCCAGAAGAAATCAAAGTGTTAAATCTTTGTGGCGATCATATTAAGCTTCAGTTGGTTTTGTCAGATTTCTTGCTTAATGTCGTGCAAATGTCTCATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGTCAGCAATGGACTTCAAAGCAAGGCCTTGCTCTAAACCTGTCACGTAGACTTCTCAATAAGTTGAGCGGTAACATACGCTACGTTAGAGAGCAAACTAAATGCTACTTCATCATCGACCTCGAGCTCAAATTAAGGCGCTCGAGAGGGTCGATGGAAGCTACTACAAGCCAAGGGACATGA 3297 43.43 MEKNRSGERGAMAFSSSADSNMRARLSNTTSTGNRAAALVQYNADAGIMSKFEQSDASGESFNYSRSVLEANESVPEEQIAAYLSRIQRGGLVQSFGCLLAIDESSFKIISYSENCFEILGLHDEFESAQGKGLIGVDMRALFTPSSGASLAKAASFREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPTRSFDPALSLAGTVQSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMSNMGSLASLAMAVVMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACELLIQAFGLQLYMELQLSLQLTEKKVLKTQTFLCDMLLRGSPCALLMQSPSIMDLVKCEGAALYYNGACCLLGITPTEAQVKDLVEWVLTNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARISSKDFLFWFRSQAAKEIQWGGAKHHPDIKDDGGKLHPRSSFKAFLEVAKSRSLPWEVQEINAIHSLQLIMRESFSNTRDSDSKVEASAQPSDTVIQDIDELSSAACEMVRLIETATVPIFGVDSTGVINGWNAKISELVGLQTSEALGKSLVNEIVHEDSRGTVGDLLSHALQGKEDNNVELKLRSFRSDKEKSTIYIVVNACTSRDYTNKIVGVCFVGKDVTPEKGVMDKFIRLQGDYKAIIESLSPLIPPIFASDVNGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTSFMILLYQGIDGQETEKFPLGFFNKDGNYEEVLLTSNKRTDAEGNIIGCICFLQIVQPNLHGVSEGLGVGDREGNLQLKELTYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSGACERQIMTIIEDMDFRSLEGGQVEINREEFILGSVLDAIICQIMTVVREKNIQLFHEIPEEIKVLNLCGDHIKLQLVLSDFLLNVVQMSHPGQGLPPELIQDMVGGGQQWTSKQGLALNLSRRLLNKLSGNIRYVREQTKCYFIIDLELKLRRSRGSMEATTSQGT 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7209264 7216348 + Cp4.1LG09g07700.1 Cpe09g00775 475141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00775 1098 ProSiteProfiles Histidine kinase domain profile. 896 1083 IPR005467 -
Cpe09g00775 1098 Gene3D PAS domain 86 331 - -
Cpe09g00775 1098 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cpe09g00775 1098 PANTHER TWO-COMPONENT HISTIDINE KINASE 1021 1087 - -
Cpe09g00775 1098 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1020 - -
Cpe09g00775 1098 Pfam PAS fold 82 194 IPR013654 GO:0006355
Cpe09g00775 1098 Gene3D PAS domain 615 736 - -
Cpe09g00775 1098 Gene3D - 209 560 IPR029016 -
Cpe09g00775 1098 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Cpe09g00775 1098 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Cpe09g00775 1098 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cpe09g00775 1098 MobiDBLite consensus disorder prediction 10 30 - -
Cpe09g00775 1098 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1077 IPR036890 -
Cpe09g00775 1098 Pfam Phytochrome region 412 587 IPR013515 GO:0006355|GO:0009584
Cpe09g00775 1098 PANTHER PHYTOCHROME E 1021 1087 - -
Cpe09g00775 1098 Gene3D PAS domain 761 872 - -
Cpe09g00775 1098 Gene3D - 404 577 IPR043150 -
Cpe09g00775 1098 Pfam His Kinase A (phospho-acceptor) domain 894 953 IPR003661 GO:0000155|GO:0007165
Cpe09g00775 1098 Pfam GAF domain 228 399 IPR003018 GO:0005515
Cpe09g00775 1098 CDD HisKA 894 949 IPR003661 GO:0000155|GO:0007165
Cpe09g00775 1098 CDD PAS 625 732 IPR000014 -
Cpe09g00775 1098 SUPERFAMILY GAF domain-like 407 584 - -
Cpe09g00775 1098 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cpe09g00775 1098 MobiDBLite consensus disorder prediction 1 30 - -
Cpe09g00775 1098 Pfam PAS fold 617 732 IPR013767 GO:0006355
Cpe09g00775 1098 Pfam PAS fold 748 867 IPR013767 GO:0006355
Cpe09g00775 1098 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Cpe09g00775 1098 SUPERFAMILY GAF domain-like 208 395 - -
Cpe09g00775 1098 SMART gaf_1 228 409 IPR003018 GO:0005515
Cpe09g00775 1098 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Cpe09g00775 1098 SMART pas_2 616 683 IPR000014 -
Cpe09g00775 1098 SMART pas_2 747 817 IPR000014 -
Cpe09g00775 1098 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Cpe09g00775 1098 CDD PAS 759 867 IPR000014 -
Cpe09g00775 1098 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cpe09g00775 1098 SMART HisKA_10 889 953 IPR003661 GO:0000155|GO:0007165
Cpe09g00775 1098 PANTHER PHYTOCHROME E 35 1020 - -
Cpe09g00775 1098 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00775 Cpe20g00493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00775 Cpe-Chr9:7209264 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe20g00493 Cpe-Chr20:2847129 Cpe09g00775 Cpe-Chr9:7209264 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00775 K12123 - csv:101214900 1876.29