Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00791 ATGGCTGCTGCTGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCGTTGGAGGCGTTTTTGGCTCCCGTTGATCTCTCCAATGTCGCCTTAGTTCAAACTCTAGGGATCGTTGCGACGGAGCTCGTTTCGCGATTTTCAGAGAAGTCTTTCTTCTTTCAGCGAAGAAATTCCCGATCTCTGATTAGGAAACTTGAGGTTTGTCTCGTATTTTTGGATTGCTTGAAGGATATTGATGCGACTTTGCCTCACACTGCGTTGCTCTGTTTGAAAGAGCTTTATTTATTGTTGTATCGATCTAAAATACTTCTTGATTATTGCTCTGAATCAAGTAAGTTATGGCTGTTGCTTCAGAACCAGACGATTTCAGGACATTTCAATGATTTGAATTTGGAATTGTTGACATTTTTAGATGTTTTTCCTCTTGAGGAAGTGGAATTAGGAGTGGATGTTAGAGAACAGGTTGAGCTTTTGCAGAAGCAATTGAGAAGGACGAGGATGTTCGTCGACGAACACGTCGAGACGTTGAGGACTCGTTTCCTTTCGTTTCTTGACGAGTTTGAGAACGGTCTGCTTCCAAATCAGAGGGAATTGAGGGAGTTTTTCGTGGATAAGTTGGGGATTCGGAATGCGAAGAGTTGTAGAACTGAAATTGAGTTTCTGGAGGAGCAGATCGTCAATCATGATGGCGATGTCGAGCCCACCGTAGCGGTGTTGAACGGTTTCGTTGCTTTTACGAGATATAGCAGGTTTTTCCTCTTTGGATTTGAGGAAGATGATATTGATTCAGGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTATGCAGGAGATTGCTGATACGTTCTTAACAATTCCAAGGGATTTTTGCTGCCCAATATCTCTGGATTTGATGAAAGATCCGGTGATCATTTCTACAGGTCAAACATATGATCGCAGTTCGATCACGAGATGGTTGGAAGAAGGGCATAACACTTGCCCGAAATCGGGGCAAATGCTCGTCCATACCCGTCTCGCTCCGAACCGTGCGTTAGGGAATTTGATCATGCAATGGTGTATAGCACATGGAGTTCCTTATGATCCACCAGAGGGGATGGATGCATCTGTAGAAAGTTATGCAATGGCTTCCCCGACACGAGCTGCTCTCGAAGCCAACCGAGCAACAGCTATGATTCTTATTCAACAGTTATCAATTGGGTCACAGGATGCGAAGACGATTGCTGCTCGTGAGATTCGTTTGTTGGCGAAAACGGGGAAAGAAAACCGTGCTTTCATCGCCGAAGCTGGTGCCATCCCTCATCTCCAAAAGTTGCTGACTTCCCCAAACCCAGTAGCACAGGAGAATTCTGTAACAGCTATGCTTAACCTTTCAATATATGACAAGAACAAAAGTTTGATTATGAGCGAGGTAGGGTGCTTAGGATCGATAACCGAAGTGTTGAGATCTGGACATAGTACCGAAGCACGGGAAAACGCTGCGGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTAGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTCAACCTCTCGACTCACACGGAGAACTGCGTTCGGATGATCGACGCTGGGGCAGTAACAGCTCTCGTAGAAGCACTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGGTTGTTCGACAGCCGATAGGGGCTGAAGCAGTCGGTAAAGACGAGAGAGCTGTAGCAGGATTAATGGCAATGATGGGATGTGGAACACCAAGAGGAAAAGAGAACGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGCGGAGCTGCCACGACCGAGCAGGTGTTCAAGGCTCCTGCATTGGCTGGGTTACTCCAAATGCTCCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTGTTCCAAAGATGCGAGCAAGTCACAATGCATTATGCCTATGCAAGTAACTCGACCCCTAACAGGGATTCGAGCTTCCCTAGCGAGGTGTCTGTACCGATATCCATATCGGTACCCGTCGTATAG 2130 46.67 MAAAAAIFSSLRRRRSPSLEAFLAPVDLSNVALVQTLGIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDCLKDIDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQTISGHFNDLNLELLTFLDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDEHVETLRTRFLSFLDEFENGLLPNQRELREFFVDKLGIRNAKSCRTEIEFLEEQIVNHDGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDDIDSGAANQKKLKKNLIMQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWLEEGHNTCPKSGQMLVHTRLAPNRALGNLIMQWCIAHGVPYDPPEGMDASVESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLTSPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTENCVRMIDAGAVTALVEALGNEGVAEEAAGALALVVRQPIGAEAVGKDERAVAGLMAMMGCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEQVTMHYAYASNSTPNRDSSFPSEVSVPISISVPVV 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7325977 7328106 - Cp4.1LG09g07910.1 Cpe09g00791 475157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00791 709 Gene3D - 393 668 IPR011989 -
Cpe09g00791 709 SUPERFAMILY RING/U-box 278 363 - -
Cpe09g00791 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 363 IPR013083 -
Cpe09g00791 709 SMART arm_5 548 586 IPR000225 GO:0005515
Cpe09g00791 709 SMART arm_5 464 505 IPR000225 GO:0005515
Cpe09g00791 709 SMART arm_5 422 462 IPR000225 GO:0005515
Cpe09g00791 709 SMART arm_5 507 547 IPR000225 GO:0005515
Cpe09g00791 709 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Cpe09g00791 709 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Cpe09g00791 709 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Cpe09g00791 709 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 689 - -
Cpe09g00791 709 SUPERFAMILY ARM repeat 395 671 IPR016024 -
Cpe09g00791 709 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Cpe09g00791 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Cpe09g00791 709 PANTHER U BOX DOMAIN-CONTAINING 12 689 - -
Cpe09g00791 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Cpe09g00791 709 CDD RING-Ubox_PUB 293 335 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00791 Cpe20g00479 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02504 Cpe-Chr1:20584372 Cpe09g00791 Cpe-Chr9:7325977 9.28E-121 dispersed
Cpe09g00791 Cpe-Chr9:7325977 Cpe10g00996 Cpe-Chr10:5674434 1.43E-134 dispersed
Cpe01g01524 Cpe-Chr1:9127821 Cpe09g00791 Cpe-Chr9:7325977 2.98E-95 transposed
Cpe20g00479 Cpe-Chr20:2772873 Cpe09g00791 Cpe-Chr9:7325977 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00791 - - csv:101204151 1171.76