Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe09g00868 | ATGAATGATTTATTCTCCAATTCCTTCAAAAAATACACTGATCTGAAGGAACAGGCGTTTCTGGACAGCATGGAGCCTGGGAATGAGAGTGTGAATTTGGACAAATTCTTTGAGGAGGTTGAGAATGTTAAGGATGATATGAAACAGGTTGAGAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGTAAGATTGTGCATAATGCTAAGACCATGAAGGAGCTGAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGCGAGAGCTTCCTTCAGAAAGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGATACCATTTCAGAGATTCAAGAACGACACGACGCAGTGAAGGAGATCGAGAAGAATCTGCTTGAGCTGCATCAGATATTCTTGGACATGGCAGCACTGGTGGAGGCCCAAGGACACCAGCTGAATGACATCGAAAGCCATGTGGCTCATGCCAACTCCTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCTCGGGAGTATCAGAAAAGCTCAAGGAAATGGACTTGCTATGCCGTCATATTGGGTATCGTTCTACTCATCATTCTTCTGCTACCAATATTGAATGTCATTTTGCCTCATTTGTTGTAG | 663 | 43.29 | MNDLFSNSFKKYTDLKEQAFLDSMEPGNESVNLDKFFEEVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLIILLLPILNVILPHLL | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7946431 | 7948564 | - | Cp4.1LG09g08650.1 | Cpe09g00868 | 475234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe09g00868 | 220 | Gene3D | - | 108 | 215 | - | - | |
| Cpe09g00868 | 220 | CDD | SNARE_syntaxin1-like | 119 | 181 | - | - | |
| Cpe09g00868 | 220 | PANTHER | SYNTAXIN-124-RELATED | 75 | 212 | - | - | |
| Cpe09g00868 | 220 | ProSitePatterns | Syntaxin / epimorphin family signature. | 126 | 165 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cpe09g00868 | 220 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 120 | 182 | IPR000727 | - | |
| Cpe09g00868 | 220 | SUPERFAMILY | t-snare proteins | 42 | 175 | IPR010989 | GO:0016020|GO:0016192 | |
| Cpe09g00868 | 220 | Pfam | SNARE domain | 157 | 208 | IPR000727 | - | |
| Cpe09g00868 | 220 | Coils | Coil | 33 | 67 | - | - | |
| Cpe09g00868 | 220 | SMART | tSNARE_6 | 115 | 182 | IPR000727 | - | |
| Cpe09g00868 | 220 | Pfam | Syntaxin | 77 | 155 | IPR006011 | GO:0016020 | |
| Cpe09g00868 | 220 | PANTHER | SYNTAXIN | 6 | 77 | IPR045242 | - | |
| Cpe09g00868 | 220 | PANTHER | SYNTAXIN | 75 | 212 | IPR045242 | - | |
| Cpe09g00868 | 220 | PANTHER | SYNTAXIN-124-RELATED | 6 | 77 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe09g00868 | Cpe-Chr9:7946431 | Cpe19g00503 | Cpe-Chr19:4303812 | 5.47E-10 | dispersed | |
| Cpe20g00409 | Cpe-Chr20:2339171 | Cpe09g00868 | Cpe-Chr9:7946431 | 1.19E-41 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe09g00868 | K08486 | - | csv:101217140 | 238.039 |