Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00868 ATGAATGATTTATTCTCCAATTCCTTCAAAAAATACACTGATCTGAAGGAACAGGCGTTTCTGGACAGCATGGAGCCTGGGAATGAGAGTGTGAATTTGGACAAATTCTTTGAGGAGGTTGAGAATGTTAAGGATGATATGAAACAGGTTGAGAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGTAAGATTGTGCATAATGCTAAGACCATGAAGGAGCTGAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGCGAGAGCTTCCTTCAGAAAGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGATACCATTTCAGAGATTCAAGAACGACACGACGCAGTGAAGGAGATCGAGAAGAATCTGCTTGAGCTGCATCAGATATTCTTGGACATGGCAGCACTGGTGGAGGCCCAAGGACACCAGCTGAATGACATCGAAAGCCATGTGGCTCATGCCAACTCCTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCTCGGGAGTATCAGAAAAGCTCAAGGAAATGGACTTGCTATGCCGTCATATTGGGTATCGTTCTACTCATCATTCTTCTGCTACCAATATTGAATGTCATTTTGCCTCATTTGTTGTAG 663 43.29 MNDLFSNSFKKYTDLKEQAFLDSMEPGNESVNLDKFFEEVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLIILLLPILNVILPHLL 220
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 7946431 7948564 - Cp4.1LG09g08650.1 Cpe09g00868 475234
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00868 220 Gene3D - 108 215 - -
Cpe09g00868 220 CDD SNARE_syntaxin1-like 119 181 - -
Cpe09g00868 220 PANTHER SYNTAXIN-124-RELATED 75 212 - -
Cpe09g00868 220 ProSitePatterns Syntaxin / epimorphin family signature. 126 165 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe09g00868 220 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 120 182 IPR000727 -
Cpe09g00868 220 SUPERFAMILY t-snare proteins 42 175 IPR010989 GO:0016020|GO:0016192
Cpe09g00868 220 Pfam SNARE domain 157 208 IPR000727 -
Cpe09g00868 220 Coils Coil 33 67 - -
Cpe09g00868 220 SMART tSNARE_6 115 182 IPR000727 -
Cpe09g00868 220 Pfam Syntaxin 77 155 IPR006011 GO:0016020
Cpe09g00868 220 PANTHER SYNTAXIN 6 77 IPR045242 -
Cpe09g00868 220 PANTHER SYNTAXIN 75 212 IPR045242 -
Cpe09g00868 220 PANTHER SYNTAXIN-124-RELATED 6 77 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00868 Cpe-Chr9:7946431 Cpe19g00503 Cpe-Chr19:4303812 5.47E-10 dispersed
Cpe20g00409 Cpe-Chr20:2339171 Cpe09g00868 Cpe-Chr9:7946431 1.19E-41 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00868 K08486 - csv:101217140 238.039