Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00926 ATGAACAGCACAAAAGAAGTGGAAATTGTGGCTTCAATTCCAGGGAAGGAGAGTGAAAAAGACCCAGAAGCTGGTTCCAATTCGATTGATTCTCGAGCCAAATTTAGCCTACAAGAACAAGAACAAGAACAAGAACGTAAACTTGAACATGGTTCTTCGTTGAGTGAGAAAGTCGAGGTGGTTGTCGAACGCAACCTCATTCTTGCAGCGTCTATCGGTGACGACTTTCAATTGGAAGTCACTGCCGATCAGATCAATAGCCACTGCGCCACGGCCGACACCCAAACCGTGGACATTGAAGAACCCCTTGATGAAGAAACTAAACAGTTGAGGACAACTGCCAAAAAAATCAGCCTATATCACGCTGCACTCAAGGGAGATTGGGAGAAGGCTCAATCCATTCTAGGCGCGGACCCTTCATGGGCTGTAAGCAACTACATAACGCGAGACAACGAGACAGCTCTTCACATTGCTGCTGGGGCCAAGCACGTCGATTTCGTAGAGCAATTGATCAACATAATGACCCCAGACGACATGACTATGGTAAACACTCATGGAAACACTGCCCTTTGCTTTGCTGCAACCTCAGGTGTTGTAAGAATCGCTGAACTTATGGTGCAAAAGAACAAAGATCTTCCCCTTATTCGTGGATTTGGCAATGCCACTCCCCTGTTCATGGCTATATCGTATCAACGCAAGCAAATGGCTTCTTATCTGTTCTCTGTTACTGATCGAAAGCAGCTGAGCTCTCAAGACCAGATTGAGCTTCTTATTGCTACCATTCATAGTGATTTTTATGGGACAAGAGGAATCTACGAGAAAGAAGTGATGAAGACACTAGCTCATCAACTAGTTAGATCACTATGGGGACATGTCCTGCGAGAATTACCCGAAAAAAAGATGTTAAAGTTCATCAAACATCCCACAATACTCTTACACGATGCAGCAAGAGCAGGCAACGTCGAGTTTCTAATCCTCCTCATTCGATCATACCCAAACATCGCATGGGAAGATGATGAAAATGGCCAGAATGTCTTTCACGTAGCCGTGGAAAATCGCCTCGAGAATGTGTTCAGCCTAATCCACGAGATAAGTGGCCTCAAAGACTTCTCAGCAAAGTACAGAACAACAGGTCAAGAAAAGTACAACATGCTTCATTTAGCTGCAAAACTCGCCGCTCCAAACCATCTCAACAGAGTCTCAGGAGCAGCCCTTCAAATGCAACGTGAGTTACTTTGGTTCAAAGAAGTAGAAAAGATCGTGTTACCATCCCAACGTGAAGCCAAATGTGAGTTTGAGTCTCTTAAGTTAATACCAAGTGAGTTATTCACTAAAGAACATAAAGATCTTCGTAAAGAAGGTGAAGAATGGATGAAGAACACAGCAAATTCTTGTATGCTTGTCTCAACTTTGATAGCTACTGTTGTTTTTGCTGCTGCTTTCACAGTTCCTGGTGGCAATGATGATAAAGGCACCCCTGTTTTTCAACGTGAGTTTTGGTTCACTATATTTGTGATATCAGATGCATTTGCGTTGGTATCATCTTCAACTTCTATTCTTATGTTCTTATCGATTTTGACATCACGTTATGCGGAAGATGATTTCTTGCACTCATTGCCGTCTAAGCTGCTGTTTGGAATAGCGTCGCTGTTCATATCAATTGTGTGCATGGTTATAGCGTTTAGTGCGACATTCTTTATGCTCTATGATGGGACCAATGTGTGGATACCAACCACTGTGACAGCAATAGCTATTGTGCCAATTAGCTGCTTCTTTGCGCTTCAATTTGGACTGTGGATGGATACGTTTTACAACACTTACTTGTCTAGACTTCTGTTCAAACCCCATCAACGTAAGTTGTTCTCATCCTCTGCTTCTCTTGCTGTTGAGTTGTTTCGTGAGCTTAAGAAAAGGAGAAGTGAGAGGAAATACTATCGGTGGGAACATTAG 1950 43.13 MNSTKEVEIVASIPGKESEKDPEAGSNSIDSRAKFSLQEQEQEQERKLEHGSSLSEKVEVVVERNLILAASIGDDFQLEVTADQINSHCATADTQTVDIEEPLDEETKQLRTTAKKISLYHAALKGDWEKAQSILGADPSWAVSNYITRDNETALHIAAGAKHVDFVEQLINIMTPDDMTMVNTHGNTALCFAATSGVVRIAELMVQKNKDLPLIRGFGNATPLFMAISYQRKQMASYLFSVTDRKQLSSQDQIELLIATIHSDFYGTRGIYEKEVMKTLAHQLVRSLWGHVLRELPEKKMLKFIKHPTILLHDAARAGNVEFLILLIRSYPNIAWEDDENGQNVFHVAVENRLENVFSLIHEISGLKDFSAKYRTTGQEKYNMLHLAAKLAAPNHLNRVSGAALQMQRELLWFKEVEKIVLPSQREAKCEFESLKLIPSELFTKEHKDLRKEGEEWMKNTANSCMLVSTLIATVVFAAAFTVPGGNDDKGTPVFQREFWFTIFVISDAFALVSSSTSILMFLSILTSRYAEDDFLHSLPSKLLFGIASLFISIVCMVIAFSATFFMLYDGTNVWIPTTVTAIAIVPISCFFALQFGLWMDTFYNTYLSRLLFKPHQRKLFSSSASLAVELFRELKKRRSERKYYRWEH 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8331449 8335733 + Cp4.1LG09g09130.1 Cpe09g00926 475292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00926 649 MobiDBLite consensus disorder prediction 12 27 - -
Cpe09g00926 649 MobiDBLite consensus disorder prediction 36 52 - -
Cpe09g00926 649 Pfam Domain of unknown function 455 567 IPR026961 -
Cpe09g00926 649 PANTHER ANKYRIN REPEAT PROTEIN 277 621 - -
Cpe09g00926 649 MobiDBLite consensus disorder prediction 1 52 - -
Cpe09g00926 649 PANTHER ANKYRIN REPEAT PROTEIN 147 267 - -
Cpe09g00926 649 Gene3D - 32 286 IPR036770 -
Cpe09g00926 649 SUPERFAMILY Ankyrin repeat 119 390 IPR036770 -
Cpe09g00926 649 Pfam Ankyrin repeats (3 copies) 119 211 IPR002110 GO:0005515
Cpe09g00926 649 Gene3D - 291 402 IPR036770 -
Cpe09g00926 649 SMART ANK_2a 341 372 IPR002110 GO:0005515
Cpe09g00926 649 SMART ANK_2a 307 336 IPR002110 GO:0005515
Cpe09g00926 649 SMART ANK_2a 219 248 IPR002110 GO:0005515
Cpe09g00926 649 SMART ANK_2a 185 214 IPR002110 GO:0005515
Cpe09g00926 649 SMART ANK_2a 150 181 IPR002110 GO:0005515
Cpe09g00926 649 PANTHER CASKIN 277 621 - -
Cpe09g00926 649 PANTHER CASKIN 147 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00926 - - - csv:101209008 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00029 Cpe-Chr5:130260 Cpe09g00926 Cpe-Chr9:8331449 7.16E-33 dispersed
Cpe09g00926 Cpe-Chr9:8331449 Cpe20g00353 Cpe-Chr20:1981178 4.86E-84 dispersed
Cpe09g00921 Cpe-Chr9:8305340 Cpe09g00926 Cpe-Chr9:8331449 4.63E-172 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g140 . . . . . . . . . Cmo18g00253 . . . . . Cpe09g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00926 Cpe_Chr09 FPKM 14.673322 16.835888 21.189007 19.686462 10.127879 10.045447 9.939272 24.352467 21.694548 24.755657