Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00930 ATGTTCAGCCCTGGTACTGCTCGTTCTCCTGCTACGCCTATCACTGCTATTTCATTTGGAGAACCTCGTGCTCGGTCCTTCCTTAAGGAAGCCACTCCATCGCCTCTTCTTTCTTTATTCACCCGTGCCTCCCTCCACGCCCACTCTGTGCCACGACCGTGCTCTACTCTCAAAGCCATGGCTGATGGTGAAGCCGTCACTCTTTCTCCAAAGATCACCGCTTCATCTCCTTCTGTATCGGCTATAATGTTCAGTTTCAGGAAAGAAGCTAGCTCTGATATCCTTGTCAGACAAGAAAAATCTTGCATTTCTAGGAAATGGGCTTCAAGAATTAGGCTTGATGGTCGTGTAAAAACTTTGCATCCTTCTATACATGGGGGTATTCTTGCTAGAAGGGACCAAAAGCATCATATGGACGCCCTTGATAAACATGGAATTGGCACATTTGATGTTGTCGTGGTAAACTTGTACCCCTTCTATGATAAAGTCACCTCATCTCAAAAAATAGACTTTGAAGATGGAATCGAGAACATTGATATTGGTGGCCCGGCCATGATCAGAGCTGCTGCAAAGAACCACAAGGATGTCTTAGTGGTCGTTGATACCGAAGACTATCCTGCACTGCTTGATTTCTTGAAAGGAAATGAGGATGATCAACAATTTCGTAGAAAGCTTGCTTGGAAGGCATTTCAACATGTAGCTTCTTACGATTCTGCAGTCTCAGAATGGCTGTGGAAGCAGACTGTTGGAGATAAATTTCCTCCCAGCTTAACCGTGCCACTTTCCCTCAAAAGTTCTCTTCGCTACGGTGAAAATCCTCATCAGAAGGCGGCCTTTTATGTTGATAAGAGTATCTCTGAAGTCAATACAGGTGGTATTGCAACAGCCATCCAACACCATGGAAAGGAGATGTCTTATAATAACTACTTAGATGCGGATGCAGCTTGGAATTGTGTGTCAGAGTTTAGGAATCCTACTTGTGTAGTTGTGAAACACACAAATCCATGTGGTGTAGCTTCACGTGATGATATTCTGGAAGCATATAGACTAGCTGTGAAGGCTGACCCCGTGAGTGCATTTGGTGGCATTGTAGCCTTCAACGTAGAAGTTGATGAGGTTCTTGCAAGGGAAATTCGGGAGTTCAGAAGCCCTACAGATGGGGAAACACGGATGTTTTATGAGATTGTTGTTGCACCCAAGTACACAGAGAAGGGGCTTGAGATCTTGCGTGGGAAATCAAAGACTCTGCGAATTCTTGAGGCAAACAAAAATGAGAAAGGAAAACTCTCACTCAGGCAAGTTGGTGGGGGGTGGTTAGCACAAGATTCTGACGACTTGGTTCCCCAAGATATACAATTTAACGTAGTTTCTGGAAAGGCCCCTCAAGAGAGCGAGCTTCAAGATGCAGAGTTTGCATGGTTGTGCGTCAAGCATGTTAAGAGCAATGCCATTGTGATAGCAAAGAATAACTGTATGTTGGGTATGGGAAGCGGGCAACCAAATCGTCTCGAAAGTTTGAGGATAGCCTTGAGGAAAGCTGGGGACGAGGTCAAAGGAGCTGCTTTGGCTAGTGACGCATTCTTCCCATTTGCTTGGAATGATGCAGTGGAAGAAGCATGCCAGAGTGGAGTAGGTGTTATTGCAGAGCCCGGGGGCAGCATTCGAGATCCTGATGCTATCGACTGCTGCAACAAGTATGGCGTGTCCCTCGTCTTCACCAACGTGAGGCATTTCAGGCATTGA 1743 45.84 MFSPGTARSPATPITAISFGEPRARSFLKEATPSPLLSLFTRASLHAHSVPRPCSTLKAMADGEAVTLSPKITASSPSVSAIMFSFRKEASSDILVRQEKSCISRKWASRIRLDGRVKTLHPSIHGGILARRDQKHHMDALDKHGIGTFDVVVVNLYPFYDKVTSSQKIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDTEDYPALLDFLKGNEDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQTVGDKFPPSLTVPLSLKSSLRYGENPHQKAAFYVDKSISEVNTGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFRNPTCVVVKHTNPCGVASRDDILEAYRLAVKADPVSAFGGIVAFNVEVDEVLAREIREFRSPTDGETRMFYEIVVAPKYTEKGLEILRGKSKTLRILEANKNEKGKLSLRQVGGGWLAQDSDDLVPQDIQFNVVSGKAPQESELQDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIALRKAGDEVKGAALASDAFFPFAWNDAVEEACQSGVGVIAEPGGSIRDPDAIDCCNKYGVSLVFTNVRHFRH 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8365684 8374022 + Cp4.1LG09g09320.1 Cpe09g00930 475296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00930 580 Pfam AICARFT/IMPCHase bienzyme 189 512 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cpe09g00930 580 Gene3D - 261 428 IPR024051 -
Cpe09g00930 580 SUPERFAMILY Cytidine deaminase-like 264 580 IPR016193 GO:0003824
Cpe09g00930 580 SMART MGS_2a 91 184 IPR011607 -
Cpe09g00930 580 Gene3D - 92 251 IPR036914 -
Cpe09g00930 580 SUPERFAMILY Methylglyoxal synthase-like 112 247 IPR036914 -
Cpe09g00930 580 Pfam MGS-like domain 107 183 IPR011607 -
Cpe09g00930 580 PANTHER AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN 113 580 - -
Cpe09g00930 580 PIRSF PurH 38 81 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cpe09g00930 580 PIRSF PurH 99 580 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cpe09g00930 580 Hamap Bifunctional purine biosynthesis protein PurH [purH]. 53 580 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cpe09g00930 580 CDD IMPCH 113 244 - -
Cpe09g00930 580 PANTHER BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH 113 580 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cpe09g00930 580 SMART aicarft_impchas 189 513 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cpe09g00930 580 Gene3D - 448 580 IPR024051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00930 K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] - csv:101206006 991.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00272 Cpe-Chr20:1527668 Cpe09g00930 Cpe-Chr9:8365684 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g129 . . . . . . . . . Cmo18g00249 . . . . . Cpe09g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006302 3 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00930 Cpe_Chr09 FPKM 12.935053 13.656808 10.323323 11.56266 11.104324 12.230847 11.354697 17.385344 16.749866 18.279665