Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00931 ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACAAACATCGTTCGTTCCCCTGTGGTTGCCTTCAACTTAAATGGATTACGTAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTTCCAAGGAGGAGAAGAAGCCAGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA 636 42.45 MHLVLRTRHLLPGVFTNIVRSPVVAFNLNGLRRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8373342 8373977 - Cp4.1LG09g09420.1 Cpe09g00931 475297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00931 211 PANTHER 39S RIBOSOMAL PROTEIN L12 18 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Gene3D Single helix bin 78 140 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 SUPERFAMILY ClpS-like 144 210 IPR014719 -
Cpe09g00931 211 CDD Ribosomal_L7_L12 76 210 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Hamap 50S ribosomal protein L7/L12 [rplL]. 74 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Pfam Ribosomal protein L7/L12 dimerisation domain 80 120 IPR008932 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Pfam Ribosomal protein L7/L12 C-terminal domain 145 210 IPR013823 GO:0003735|GO:0006412
Cpe09g00931 211 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 79 120 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 PANTHER F20P5.9 PROTEIN 18 211 IPR015608 -
Cpe09g00931 211 Gene3D - 141 210 IPR014719 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00931 Cpe-Chr9:8373342 Cpe19g00827 Cpe-Chr19:6176641 3.70E-49 dispersed
Cpe02g01381 Cpe-Chr2:12121985 Cpe09g00931 Cpe-Chr9:8373342 4.19E-36 transposed
Cpe19g00676 Cpe-Chr19:5372359 Cpe09g00931 Cpe-Chr9:8373342 1.79E-37 transposed
Cpe20g00273 Cpe-Chr20:1532831 Cpe09g00931 Cpe-Chr9:8373342 6.86E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00931 K02935 - csv:101218390 312.383