Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00931 ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACAAACATCGTTCGTTCCCCTGTGGTTGCCTTCAACTTAAATGGATTACGTAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTTCCAAGGAGGAGAAGAAGCCAGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA 636 42.45 MHLVLRTRHLLPGVFTNIVRSPVVAFNLNGLRRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8373342 8373977 - Cp4.1LG09g09420.1 Cpe09g00931 475297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00931 211 PANTHER 39S RIBOSOMAL PROTEIN L12 18 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Gene3D Single helix bin 78 140 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 SUPERFAMILY ClpS-like 144 210 IPR014719 -
Cpe09g00931 211 CDD Ribosomal_L7_L12 76 210 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Hamap 50S ribosomal protein L7/L12 [rplL]. 74 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Pfam Ribosomal protein L7/L12 dimerisation domain 80 120 IPR008932 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 Pfam Ribosomal protein L7/L12 C-terminal domain 145 210 IPR013823 GO:0003735|GO:0006412
Cpe09g00931 211 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 79 120 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cpe09g00931 211 PANTHER F20P5.9 PROTEIN 18 211 IPR015608 -
Cpe09g00931 211 Gene3D - 141 210 IPR014719 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00931 K02935 RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12 - csv:101218390 312.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00931 Cpe-Chr9:8373342 Cpe19g00827 Cpe-Chr19:6176641 3.70E-49 dispersed
Cpe02g01381 Cpe-Chr2:12121985 Cpe09g00931 Cpe-Chr9:8373342 4.19E-36 transposed
Cpe19g00676 Cpe-Chr19:5372359 Cpe09g00931 Cpe-Chr9:8373342 1.79E-37 transposed
Cpe20g00273 Cpe-Chr20:1532831 Cpe09g00931 Cpe-Chr9:8373342 6.86E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g128 . . . . . . . . . Cmo18g00248 . . . . . Cpe09g00931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007162 1 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 3 1 2 1 1 2 1 1 37