Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00933 ATGGCCATTGCCTATGCTAACACCGATTCCATGGCCGCTTTTCTCATCAAGGATCATCATCATCATCATCACCACCATTCTTCTCTCTCCTTCTTCTTCAGCTACCTGCTCTTTTTTCTTCTGTTTTCATCTCCTCCCACCGCTTACGCATTTACTGGAGATGTAGCCGAAGATTCAAAGAACAGAAGGGATGATTTGTTTGTGGAAATTCTTAAAGACGAAGCAGTAGGAAGATTGAACGAGCTAGGGAAGGTAAGTGATGCTGATCGCTATCTTGAGAGGACGTTCTTGAGTCCAGCTTCTATCAAAGCAAGATTTCTTCTTAAAAAATGGATGGAGGATTCTGGATTAAGAACGTGGGTGGACTGTATGGGCAATCTACATGGTCGAGCTGAGGGAAGGAATGCAAGTGCTGAAGCTTTACTGATTGGTTCTCACTTGGATACCGTTGTTGATGCTGGAAAATTTGATGGCGCATTAGGCATCATATCTGCTATCTCTGCTTTGAAAGTTTTCTATATGAATGGGAAGTTAGAAGAATTAAAGAGGCCAATTGAGGTGATTGCCTTCAGTGATGAAGAGGGTGTGAGGTTTCAATCAACCTTCTTGGGAAGTGCTGCTATTGCTGGTATTTTACCAGTTTCGTCTTTGGAAATATCAGATAAAAGTGGTATGTCAATAAAAGATGTTATTACGGAGAGTGGAGTAGAGATAACAGAGGAGAACTTGTTGCAACTCAAGTATGACCGCAAGTCTGTATGGGGATATGTTGAGGTTCATATCGAACAAGGACCTGTACTTGAATGGACTGGTTTTCCTCTTGGAGTGGTTAGGGGCATTGCTGGGCAGTCACGACTAAAGGTTACAGTGAGAGGTTCTCAGGGGCATGCAGGAACAGTTCCAATGCCTTTGCGCCAGGATCCCATGGCAGCTTCAGCTGAATTGATTGTACAATTGGAAAAGCTCTGTAAGCAACCAGAGAGCTACTTATCTTTTGATGGTCATTGCAGTGATTTTACCTTGAAGTCACTTTCCACATCTCTTGTCTGTACGGTTGGAGAGATATCAACATGGCCCAGTGCAAGTAATGTCATTCCTGGCCAGGTGACCTTCACTGTGGATTTACGTACTATCGATGACATAGGACGAGAAGCCGTGATTTATGAATTCTCTAATCAGCATGATGCAAATGCTGTAATCAGTGATTCGGAGCTGAGCTCGCAGCTGAAATCTGCAGCTTCTACGGCCTTAAAAAAAATGGTAGGCGACATTCAAGAGGAAGTACCTATATTAATGAGTGGAGCAGGGCATGATGCAATGGCTATGTCTCATTTGACAAAGGTGGGAATGTTGTTTGTCCGATGTCGTGGAGGCGTAAGTCACTCTCCTGCCGAGCATGTATTGGATGACGATGTTTGGGCTGCAGATCGAACTGCACAACAGTTTGACCATGTGGAGTGCGGTCGTGCCATTGTGGACGCAGGGGACTAG 1491 44.4 MAIAYANTDSMAAFLIKDHHHHHHHHSSLSFFFSYLLFFLLFSSPPTAYAFTGDVAEDSKNRRDDLFVEILKDEAVGRLNELGKVSDADRYLERTFLSPASIKARFLLKKWMEDSGLRTWVDCMGNLHGRAEGRNASAEALLIGSHLDTVVDAGKFDGALGIISAISALKVFYMNGKLEELKRPIEVIAFSDEEGVRFQSTFLGSAAIAGILPVSSLEISDKSGMSIKDVITESGVEITEENLLQLKYDRKSVWGYVEVHIEQGPVLEWTGFPLGVVRGIAGQSRLKVTVRGSQGHAGTVPMPLRQDPMAASAELIVQLEKLCKQPESYLSFDGHCSDFTLKSLSTSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDIGREAVIYEFSNQHDANAVISDSELSSQLKSAASTALKKMVGDIQEEVPILMSGAGHDAMAMSHLTKVGMLFVRCRGGVSHSPAEHVLDDDVWAADRTAQQFDHVECGRAIVDAGD 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8390455 8395524 + Cp4.1LG09g09330.1 Cpe09g00933 475299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00933 496 SUPERFAMILY Zn-dependent exopeptidases 73 477 - -
Cpe09g00933 496 CDD M20_bAS 78 475 - -
Cpe09g00933 496 Pfam Peptidase family M20/M25/M40 142 475 IPR002933 GO:0016787
Cpe09g00933 496 Pfam Peptidase dimerisation domain 282 391 IPR011650 -
Cpe09g00933 496 SUPERFAMILY Bacterial exopeptidase dimerisation domain 282 405 IPR036264 -
Cpe09g00933 496 PANTHER ALLANTOATE DEIMINASE-RELATED 62 476 - -
Cpe09g00933 496 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 77 472 IPR010158 GO:0016813
Cpe09g00933 496 Gene3D - 282 408 - -
Cpe09g00933 496 Gene3D Zn peptidases 86 474 - -
Cpe09g00933 496 PANTHER ALLANTOATE DEIMINASE-RELATED 62 476 IPR010158 GO:0016813
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00933 K02083 allC; allantoate deiminase [EC:3.5.3.9] - csv:101218785 834.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00313 Cpe-Chr8:1989329 Cpe09g00933 Cpe-Chr9:8390455 4.52E-47 transposed
Cpe20g00275 Cpe-Chr20:1544339 Cpe09g00933 Cpe-Chr9:8390455 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g112 . . . . . . . . . Cmo18g00247 . . . . . Cpe09g00933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009494 1 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00933 Cpe_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0