Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00935 ATGAGTTTCATAAACTCCTCCATCACTCTCCCATTTAGCTATAATGTTTCGGGTTCGAATCGCTTTCCGGGCTCGACTAGTTCGAGCCCGACAGAACCCATGATGGATTCAAGAATTTGGAGCAAACTACCCGAGAGGCTGCTGGATCGCGTCGTGGCGTTCCTCCCTCCACCGGCGTTCTTCCGAGCTCGTTGCGTCTGTAAAAGATGGTACGGCCTTCTCTTCTCCGCCGCCTTTCTTGAATTGTATCTCCTACTTCCGCCGCACCGCCGCCATTGGTTCCTTTTCTTCAAGCTCAAGGCAAATAAGACCCAAATTTACAGAAATTGTGGCGGCCAATCCCGCCCCATCTACGAAGGCTACCTCTTCAATCCATACGACGTGGCGTGGCACCGCCTCTCCTTCGCTTTAATCCCGCCGGGATTCTCACCGGTGGCCGCCTCCGGCGGCCTAATCTGCTGGGCACCGGACGGCGGAGGTCCCAAAACCCTAATCCTCTCAAACCCAATTCTAGGGACACTCTCCCAACTTCCCCCAACGACAAGACCGCGCCTTTTTCCGTCGATCGGCCTCGCCGTAACGCCATTCTCCGTCGACATAACCATTGCCGGCGACGACTTAATTTCCCCCTACGCCGTGAAAAACCTCACCGCGGAGACGTTCCACATAGACGGCGGCGGGTTCTACTCCATATGGGCCACGTCATCCACACTCCCCCGGCTATGCAGCTTGGAGTCCAGCAGAATGGTCCACGTGGACGGAAGATTCTACTGCATGAACTATAGCCCATTCAGCATCTTAGCATACGACATGTCGGAGAACAAATGGTGGAAGATCCAAGCGCCGATGCGTCGGTTCTTACGGTCTCCAAATTTGTTGGAGAGCAGAGGGAAGTTGGTGTTAATGGCGGCGGTGGAGAAGAGCAAGCTGAATGTTCCAAAGAGCTTAAGGGTATGGGCCCTACAAGGGTGTGGGATGACGTGGATAGAAATGGAGAGAATGCCACATCAGCTCTACGTGGAGTTTGAGGGGATTGAGAAAGGGAGTGGATTTGATTGCGTGGCACATGGGGAATTTGTGGTGATTATGATAAAAGGGTGTTGGGATAAGGCTGCGCTTTTGTATGACGTGTGCAAGAGGACGTGGCAGTGGATTCCACCGTGTCCCTATATTGTTGGAAGTAATGATGATGACGGTGAAGACCAAGTGGTGTTGCATGGGTTTGCTTATGATCCGAGGTTGGCCACGCCGGTGACTGGACTCATTCATCAGCTCTCTTCTCTTCCATTTCAGAATTTCAATGCTAATTAA 1311 52.56 MSFINSSITLPFSYNVSGSNRFPGSTSSSPTEPMMDSRIWSKLPERLLDRVVAFLPPPAFFRARCVCKRWYGLLFSAAFLELYLLLPPHRRHWFLFFKLKANKTQIYRNCGGQSRPIYEGYLFNPYDVAWHRLSFALIPPGFSPVAASGGLICWAPDGGGPKTLILSNPILGTLSQLPPTTRPRLFPSIGLAVTPFSVDITIAGDDLISPYAVKNLTAETFHIDGGGFYSIWATSSTLPRLCSLESSRMVHVDGRFYCMNYSPFSILAYDMSENKWWKIQAPMRRFLRSPNLLESRGKLVLMAAVEKSKLNVPKSLRVWALQGCGMTWIEMERMPHQLYVEFEGIEKGSGFDCVAHGEFVVIMIKGCWDKAALLYDVCKRTWQWIPPCPYIVGSNDDDGEDQVVLHGFAYDPRLATPVTGLIHQLSSLPFQNFNAN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8399822 8401132 - Cp4.1LG09g09370.1 Cpe09g00935 475301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00935 436 Pfam F-box domain 40 71 IPR001810 GO:0005515
Cpe09g00935 436 ProSiteProfiles F-box domain profile. 37 86 IPR001810 GO:0005515
Cpe09g00935 436 PANTHER F-BOX/KELCH-REPEAT PROTEIN 40 415 - -
Cpe09g00935 436 SUPERFAMILY F-box domain 25 92 IPR036047 GO:0005515
Cpe09g00935 436 SUPERFAMILY Galactose oxidase, central domain 120 396 IPR011043 -
Cpe09g00935 436 SMART fbox_2 43 83 IPR001810 GO:0005515
Cpe09g00935 436 PANTHER PROTEIN UNUSUAL FLORAL ORGANS 40 415 - -
Cpe09g00935 436 Gene3D - 35 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00935 - - - cmos:111456693 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00935 Cpe-Chr9:8399822 Cpe13g00993 Cpe-Chr13:8208739 4.50E-29 dispersed
Cpe03g01132 Cpe-Chr3:9275711 Cpe09g00935 Cpe-Chr9:8399822 1.28E-19 transposed
Cpe20g00277 Cpe-Chr20:1553934 Cpe09g00935 Cpe-Chr9:8399822 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g105 . . . . . . . . . Cmo18g00245 . . . . . Cpe09g00935 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009727 1 0 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00935 Cpe_Chr09 FPKM 44.362297 47.890251 43.571671 41.807743 6.789247 6.135647 7.841313 55.738209 54.435333 56.837334