Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00936 ATGACGAAACGTCGTCCCGCCACCGCCACCGCCACCGCCACTCTGGTCCTCGTCCTCGTCCTGTTCGAATGTTCGAAGCAGATGGCCTTAGCGGAAAATGGGGTCCCGGCGATCTTCGTGTTCGGAGACTCTCTTGTGGATGTTGGTAACAATAATTTTCTTCATTCAGCTGCTAGAGCTAACTTTTACCCTTATGGGATTGATTTTCGTGGTGGTCCGACCGGGAGATTCTCTAATGGAAGAACTATTATAGATATGATTGTTGACTACCTTGGAATTCCGAACGCTCAAGAGTTTGCAAATCCCGACACTTCGGGAGATAGAATCCTTAAAGGTGTTAATTACGCTTCGGCGGCTGCTGGCATCCTCGACGAGACCGGTAGACACTATGGAGAGAGGTACAGTTTGAATCAACAAGTGGTGAACTTTGAAAGCACTCGGAATGATTTAAGAAAATCAATGGACAATTGGAATTTGACTCGCTACTTATCGAGATCCATAGCTTTCATGGCGTTTGGAAGCAACGATTACATAAACAACTACCTTATGCCAAATCTCTATACTTCTAGATTCAGATACACCTCCAACCAGTTCGCCAACCATCTTCTAAACAGCTATACTCGACAGCTTCTCGCACTACGAAGTGCAGGGCTGAGGAAGTTTGTGGTGGCCGGAATTGGGCCGTTGGGTTGCATTCCGAACCAACGCGCGACTGGTGTGGCGCTTCCGGGGCGGTGTGTGGACAACGTGAATGAGATGCTGGGAGATTTTAACGAAGGGTTGAGATCGCTAGTAACTCAATTGAATAGCCAGTACCCGGATTCAAAGCAACATGGGCACTGA 843 47.92 MTKRRPATATATATLVLVLVLFECSKQMALAENGVPAIFVFGDSLVDVGNNNFLHSAARANFYPYGIDFRGGPTGRFSNGRTIIDMIVDYLGIPNAQEFANPDTSGDRILKGVNYASAAAGILDETGRHYGERYSLNQQVVNFESTRNDLRKSMDNWNLTRYLSRSIAFMAFGSNDYINNYLMPNLYTSRFRYTSNQFANHLLNSYTRQLLALRSAGLRKFVVAGIGPLGCIPNQRATGVALPGRCVDNVNEMLGDFNEGLRSLVTQLNSQYPDSKQHGH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8403972 8405791 + Cp4.1LG09g09350.1 Cpe09g00936 475302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00936 280 Gene3D SGNH hydrolase 23 276 IPR036514 -
Cpe09g00936 280 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 15 275 - -
Cpe09g00936 280 CDD SGNH_plant_lipase_like 36 276 IPR035669 -
Cpe09g00936 280 Pfam GDSL-like Lipase/Acylhydrolase 38 275 IPR001087 GO:0016788
Cpe09g00936 280 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 15 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00936 - - - csv:116402503 446.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01498 Cpe09g00936 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00936 Cpe-Chr9:8403972 Cpe20g00486 Cpe-Chr20:2816016 7.67E-68 dispersed
Cpe03g00716 Cpe-Chr3:4337310 Cpe09g00936 Cpe-Chr9:8403972 6.66E-65 transposed
Cpe20g00279 Cpe-Chr20:1561026 Cpe09g00936 Cpe-Chr9:8403972 1.01E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00936 Cpe_Chr09 FPKM 17.07452 17.655724 0.0 0.0 2.193913 1.432425 2.004862 57.916882 61.698437 57.051758