Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00942 ATGCTTTCCAGAGTTGGGAGCGTCGGTTGGATGGAGAATCGAGAGGATGAAGGCTCTGCTTCCTGGACTAATAACAACACCCACAACCATCTCAACCACCCTGCTGCTAATTGCTCTGTTTTGGATAACAAGGACCAAATTAGCTCTCTCTCAACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGCATTGCTGCTAATGCCCTCCATAACCATCACGACATCAATGGCATAAGCTTCTCTCAGAATTTCACTGACCCACCTGATAATTTGTTGCTTCCCCATGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTGTTCAATAACATTGACCCGTCTCAATTGCAGTTCTTCTTACCCCCAACTCGCACTTTGTCTTCACTTTACAAGGTCATTGGTAATAACCCTTTAGAGCATGGCTTCGATTTCGGGGCAGAGGTTGGGTTTCTTGATGTCCAAGCTTCGAATACTTCGGCTCTGCTCAGCAGTGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACAAGTCAGATGAACAGTCCTAATATGTGCTTAGGCTCCCAATTGACAACACCTAACCTGCCCCAAATGACTGGAAATTGTTCGGGTTTAGCGGGATTCCAGAGTTTGGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCCTTTCCCTCAGTGGGAACTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGCTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTGTTCTAACAGGATTGAAGGGGGCGTTGGGAAAAATGAAGTGGGTGATGAAAATGCGAAGAGGAAAATGATTTATGCAGATGAGTTGCAAGATACTAGCATCGACACAGCCCGTTTCAACTACGATTCTGATGACTTTACTGAGAATAATGACACTAAGTTGGATGAGAGTGGTAGAAATGTTGGAAATACTTCTAACGCCAATAGTACGGTGACCGGTGGCGATCAGAAGGGGAAGAAGAAACGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCCAAAATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTACCTGAAGGAACTACTGCAAAGAATCAATGACCTTCATAATGAATTGGAATTTTCTCCTTCCGGTACAGCGTTGACGCCGAGCACAAGCTTTCACCCCCTGACTCCAACCCCACCGACCCTCTCGAGTCGTATAAAGGAAGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGTCGGGCAGTAAACATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCTCAGTTAGGGCATTAGATAATCTTGGCTTAGACATCCAGCAAGCTGTGATTAGCTGCTTCAATGGTTTTGCCATGGACATTTTCCGAGCAGAGCAATGCAGCGAAGGCCAGGATGTCCATCCTGAGCAGATAAAAGCAATACTATTGGATTCAGTAGGTTTCAATGGTAGCTGCTGA 1641 46.74 MLSRVGSVGWMENREDEGSASWTNNNTHNHLNHPAANCSVLDNKDQISSLSTFKSMLEVEDDWCIAANALHNHHDINGISFSQNFTDPPDNLLLPHGDSSSSCSPSSSVFNNIDPSQLQFFLPPTRTLSSLYKVIGNNPLEHGFDFGAEVGFLDVQASNTSALLSSGGGLLTGFTDLSPTSQMNSPNMCLGSQLTTPNLPQMTGNCSGLAGFQSLDENLGNALLLNRSKLLRPLESFPSVGTQPTLFQKRAALRKSLADKGSNLGVLSPDGGWCSNRIEGGVGKNEVGDENAKRKMIYADELQDTSIDTARFNYDSDDFTENNDTKLDESGRNVGNTSNANSTVTGGDQKGKKKRLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGTALTPSTSFHPLTPTPPTLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSSVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGSC 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8431363 8436729 - Cp4.1LG09g09410.1 Cpe09g00942 475308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00942 546 CDD bHLH_AtAMS_like 358 421 - -
Cpe09g00942 546 Gene3D - 348 418 IPR036638 GO:0046983
Cpe09g00942 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Cpe09g00942 546 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 544 - -
Cpe09g00942 546 CDD ACT_UUR-ACR-like 475 535 - -
Cpe09g00942 546 Pfam Helix-loop-helix DNA-binding domain 362 404 IPR011598 GO:0046983
Cpe09g00942 546 Coils Coil 394 414 - -
Cpe09g00942 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 422 IPR036638 GO:0046983
Cpe09g00942 546 MobiDBLite consensus disorder prediction 318 356 - -
Cpe09g00942 546 MobiDBLite consensus disorder prediction 1 28 - -
Cpe09g00942 546 MobiDBLite consensus disorder prediction 422 441 - -
Cpe09g00942 546 MobiDBLite consensus disorder prediction 329 347 - -
Cpe09g00942 546 PANTHER BHLH TRANSCRIPTIONAL FACTOR 97 544 - -
Cpe09g00942 546 SMART finulus 361 410 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00942 - - - cpep:111802474 1011.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00453 Cpe-Chr4:5257417 Cpe09g00942 Cpe-Chr9:8431363 1.81E-155 dispersed
Cpe07g00150 Cpe-Chr7:849756 Cpe09g00942 Cpe-Chr9:8431363 1.10E-42 dispersed
Cpe09g00942 Cpe-Chr9:8431363 Cpe10g00525 Cpe-Chr10:3080435 4.27E-36 dispersed
Cpe09g00942 Cpe-Chr9:8431363 Cpe03g00658 Cpe-Chr3:3925974 5.62E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g28 . Blo16g00289 . . . . Bma06g00283 . . Cmo18g00238 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00527 Csa01g00990 Chy12g01144 Cme12g01562 . . Bda11g01575 . . . . . Sed08g2407 . . . Cma18g00292 Car13g00673 Car18g00249 Cpe09g00942 . Bhi08g01538 Tan05g3011 Cmetu06g0036 Lac10g0613 Hepe07g2082 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50031 PF00010 HLH 1.30E-09 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00942 Cpe_Chr09 FPKM 4.807303 4.235377 2.281954 2.466796 7.047108 6.42215 6.439869 2.125375 1.818685 1.820358