Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00945 ATGACAATACCGCCGGAGAACGACCAGTTTGCTCTTTCAAACGACCGGATTTCTTCTCTTCTTGATGATATTCCGCTCATCAACAATTTCAAGGGGAAATGGTCTTCAATCAGAGCGAAACTCTCCGATCTTCGCACACAGTTGATAGATGTTTCTGAGTTTCCGAATTCGTCTTCCAATCCTCTTTCTGTTGATTTTCTTCATTCTGTTTTGGAAGTTCTTAGTGAGGCGGCTTCTCTCTCGGAGAAGTGCCGGAATCCGGAACTTTCCGATGGTAAACTCAAGACTCAGAGCGATATTGACTCGGTTCTTGCGAAGTTGGACTCTCTACTTAAAGATGGTGAGGTTTTGATTCGGAGTGAGATTCTTCATGATGGTGCGGTTTCGAGTTCGTCGTCTAGGAGGGAGGCTGTGCGGGCGGAGTCGAGGAATTTAATCACGAGGTTGCAGATTGGGAGCATTGAATCGAGGGTATTGGCTATTGAATCGCTGTTGAAGTTGTTGAATGAGGATGATAAGAATGTAACGATTGCTGCGGCTCAAGGGATTGTTCCTGTTCTTGTTCGGCTACTGGATTCCAGTTCTTTAGAACTGAAGGAACGGGCTGTTGCTGCTATTTCCATCGTTTCATCGGTGGATGGTGTTAGGCATTTAATGATTGCTGAAGGTCTACAGCTTTTGAATCACTTGCTGAGGATTCTCGATTCTGGTAGCGGTTTTGCTAAGGAGAAGGCCTGTTTAACCCTCCAACCTTTAAGCATTTCGAAAGAAAATGCTAGATCAATCGGTTCTAGAGGAGGAATTTCATCTCTATTGGAGATTTGTGAGGCCGGCACTCCCGGTTCTCAAGCCTCAGCAGCTGCTGTTCTTAGAAATCTTGCATCATTTGGTGAAATTAAAGAGAATTTCATTGAAGAAAATGGGGTTATCGTTCTTTTGGGGCTTTTAGCCTCGGGAACTCCGTTAGCTCAAGAAAATGCAATTGGATGTCTATGTAATTTAGTTGCAGAAGATGATAATCTGAAGCTCTTGATCGTTAGAGAAGGTGGGATCGAGCTTTTGAGAAGTTTCTGGGATTCAGCTCCATCAGTTCATAGTCTCGAAGTGGCTGTGGAGCTTTTGGGGCTCTTGGCTTCATCTGCCCCGATCGCCGAAGCTCTTATCTCAAACGGGTTTGTTGATCGGCTTCTTCCAGCTCTAAGCTGCGGAGTATTAGGCGTTAGAACTGCCGCAGCTCGAGCAGTTTACGAGCTCGGATTCTGCACAAAAACAAGAAAAGATATGGGGGAAGCTGGATTCATCACACCCTTGGTTAATATGCTAGATGGCAAGTCTGTTGAGGAGAAAGAAGCAGCTGCCAAGGCATTGTCTTCTCTATTACAATACACAGGTAACAGAAAAATTTTCCAGAAAGAAGAGAAAGGGATAGTAAGTGCAGTCCAACTCTTAGACCCTTCAATATCAAATCTAGACAAGAAGTACCCTGTTTCATTATTAGCCTCGGTTATGATATCAAGCAAGTGTAGAAAGCAGATGGCTGCTGCTGGTGCTGGTTTATATCTTCAAAAGCTTGTTGAAATGAATGTTGATGGATCAAAGAAACTATTGGAATGTCTTGGCCGAGGTAAAATCTGGGGTGTCTTTGCCAGATCTTAG 1656 44.14 MTIPPENDQFALSNDRISSLLDDIPLINNFKGKWSSIRAKLSDLRTQLIDVSEFPNSSSNPLSVDFLHSVLEVLSEAASLSEKCRNPELSDGKLKTQSDIDSVLAKLDSLLKDGEVLIRSEILHDGAVSSSSSRREAVRAESRNLITRLQIGSIESRVLAIESLLKLLNEDDKNVTIAAAQGIVPVLVRLLDSSSLELKERAVAAISIVSSVDGVRHLMIAEGLQLLNHLLRILDSGSGFAKEKACLTLQPLSISKENARSIGSRGGISSLLEICEAGTPGSQASAAAVLRNLASFGEIKENFIEENGVIVLLGLLASGTPLAQENAIGCLCNLVAEDDNLKLLIVREGGIELLRSFWDSAPSVHSLEVAVELLGLLASSAPIAEALISNGFVDRLLPALSCGVLGVRTAAARAVYELGFCTKTRKDMGEAGFITPLVNMLDGKSVEEKEAAAKALSSLLQYTGNRKIFQKEEKGIVSAVQLLDPSISNLDKKYPVSLLASVMISSKCRKQMAAAGAGLYLQKLVEMNVDGSKKLLECLGRGKIWGVFARS 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8468524 8470179 + Cp4.1LG09g09440.1 Cpe09g00945 475311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00945 551 SMART arm_5 171 211 IPR000225 GO:0005515
Cpe09g00945 551 SMART arm_5 338 379 IPR000225 GO:0005515
Cpe09g00945 551 SMART arm_5 255 295 IPR000225 GO:0005515
Cpe09g00945 551 SMART arm_5 296 336 IPR000225 GO:0005515
Cpe09g00945 551 SMART arm_5 421 461 IPR000225 GO:0005515
Cpe09g00945 551 SMART arm_5 380 420 IPR000225 GO:0005515
Cpe09g00945 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 549 - -
Cpe09g00945 551 Pfam Armadillo/beta-catenin-like repeat 176 207 IPR000225 GO:0005515
Cpe09g00945 551 SUPERFAMILY ARM repeat 144 489 IPR016024 -
Cpe09g00945 551 Gene3D - 130 359 IPR011989 -
Cpe09g00945 551 Gene3D - 360 541 IPR011989 -
Cpe09g00945 551 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 8 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00945 - - - csv:101203406 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00824 Cpe-Chr4:7702362 Cpe09g00945 Cpe-Chr9:8468524 3.36E-77 dispersed
Cpe09g00945 Cpe-Chr9:8468524 Cpe20g00631 Cpe-Chr20:3948834 0 dispersed
Cpe09g00945 Cpe-Chr9:8468524 Cpe03g01706 Cpe-Chr3:12963475 1.95E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g43 . . . Bda15g00690 Bpe12g00464 . . . . Cmo18g00236 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0250 Cone19ag0232 . . . . . Blo15g00195 . . . . . Bma08g00274 . . . . Cma18g00298 . Car18g00246 Cpe09g00945 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003996 1 3 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 2 1 1 1 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00945 Cpe_Chr09 FPKM 0.391667 0.727091 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0