Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00950 ATGGCTCTTACAAACATCAAAACAAGATCTTCAATGGTTACAAACATCCTCTGTTTTCTTGTTGCTCTGTTTTTCATCCTCTTATTGTTCCTTCCATTATCCAATTACTCAATAAATTTCCCAACACCCATTTCCGTTTTCATCATCGGCAATCTGATCGTTGTCGTTCTCATCGGAGAATCCAAAGTTTTTGCTTCAAAAAGTTCGGATTTTTTTGCTGATAATCTCTGTTTTTACGATGGGACATTGATTGTCGGAGGAGATGAAAACAGGGGTTTGAAGATTTGTCATGATGATGATGAATGGGAGATGGGTTTGGAGAATTGTGAGGATTTGAGTAAAAGAGCCGATGATTTCATTGCTAGAGTGAATATGCAGAGAGAAATTGAAGCTTCGATACTCTGTTTTTGTTGTGAATTGAAGACGACGAAGAACAAATATAGAAAGAAAGCTTTGAAATGTTTGGCGAATCGTAGCTTCTTGAATTTAGTAGCTCCGCCGTTCACCGTCGTCACTCTCGGCCTATTACTGCCGCATTACGTCGTTTTCAAGTACTTCTTCTCTTTGATTAGAGGTTTGTTTAACGAAGATGTCACCGGGAAAGTCGTTCTCATCACCGGAGCTTCCTCCGGCATCGGCGAGAATTTGGCATACGAGTACGCCAAGAGAGGAGCTCAATTAGTGCTTGTAGCTAGACGAGAGAGCTCACTTGAGGAAGCTGCTGAAGCAGCTCGCTATTATGGCTCCCCTGAGGTTATCACCATTGCAGGGGATGTTTCCGAGCTATCGGACTGTCGGCGAATCATCGACGACACGATGAATCATTTCGGAAGATTAGATCATTTGGTGAACAATGCCGGCGTTGCCAACATGACTCTGTTTGAAGAAATCATTGATATCACTTCCTTCAAACAAATAATGGAAACGAACTATTGGGGGTCTGTTTATATGACTTGGCTATCAATTCCTTATTTGAAGAACAGGGGAGGGAAGATCATAGTGGTTTCATCGGCGGCGGCGTGGTTGCCGTCACCCAGAATGAGCATTTACAATGCAAGATTGAGTTTTTACTTAAAACCCATGTGGGATTATGGGTTTTCGTTGAGTTATTTGATTTGGGCAAGCAAGGCGGCGCTGAGGATCTTTTTTGAGACATTGAGAGTGGAAATGTCGCCGGAGATTGGGATCACCGTGGTGACGCCGGGCTTTGTCGAGTCGGAGATAACTAAAGGGAAGGCGTTGTATTCTCATGGAAGAATGGAAGTTCATCAGGACGTTAGAGATGCTCTGGTGGGGGCGATTCCGGTAGAGACGGCGGCGGCCTGCGCTAAGGCAATCGTGAGAAGCGCTTGCCGGGGTGATCGGTACTTGACGGAGCCGTCGTGGTACAACGCTGCGTATTACTTAAAGGCGTTTTGTCCGGAGGTGGTGGAGTGGTGCTACCGTATATTGGTGTATACAACGCCGGGAACCTCCGCCGCGGAGGCGCTCAATAAACAGATTCTGGATCTCACCGGAGCCAAGACGGCCATCGAAGATGTCGCCGGAAAAGTTGTTCTAATCACCGGAGCGTCGTCGGGAATTGGCAAGCATATGGCGTATGAGTATGCTAAAAGAGGTGCTTATTTGGCGTTGGTTGCTAGAAGAGAGAACCGCCTCCGTGAAGTCGCCGGCGTGGCGCGGTTCTTTGGCTCGCCCTTTGCTCTTGACGTAAACTTTTGGGGAATGGTTTATTGTACTTACTTTGCAATTCCCCACCTCAAGCAAAGCAGAGGAAAGATCATCGGAATCTCTTCCTCCGCCGCATGGCTGCCGGTGCCAAGGCTGAGCTTCTACAGCGCGAGCAAAGCAGCGGTGATAAGCTTCTACGAGACGCTACGAGTAGAAGTCGGAAGAGATATCGGAATCACCATCGTGACGCCGGGGCTCGTTGAATCGGAGATGACACAAGGAAAGTTCATGTCGAAAGACGGCGGGTTGTATCTCGATCAAGAGCTCAGAGATGCTATGGTGAGCGCAATGCCGATTATGCCGATCGACAGCGCGGTGAAGGGGATCGTGAGGAGTGCATGTAGAGGAGACCGATACGCGACTGAGCCACGGTGGATGAGGATGGCGTTTTATTATAAGACGTTGTGGCCGGAGTTGGTGGAGTGGGTTAATTACTTGATTGGTATGACGGGTTCTTCCTCGACCGACAGTTTTGGGAAGAGGCTGTTGGAGCTCATTGGGTTGAAGACGTGGTTTTATCCTGAATCTGTTCGGTCCCAGGAATTGTGGCTC 2283 47.79 MALTNIKTRSSMVTNILCFLVALFFILLLFLPLSNYSINFPTPISVFIIGNLIVVVLIGESKVFASKSSDFFADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKKALKCLANRSFLNLVAPPFTVVTLGLLLPHYVVFKYFFSLIRGLFNEDVTGKVVLITGASSGIGENLAYEYAKRGAQLVLVARRESSLEEAAEAARYYGSPEVITIAGDVSELSDCRRIIDDTMNHFGRLDHLVNNAGVANMTLFEEIIDITSFKQIMETNYWGSVYMTWLSIPYLKNRGGKIIVVSSAAAWLPSPRMSIYNARLSFYLKPMWDYGFSLSYLIWASKAALRIFFETLRVEMSPEIGITVVTPGFVESEITKGKALYSHGRMEVHQDVRDALVGAIPVETAAACAKAIVRSACRGDRYLTEPSWYNAAYYLKAFCPEVVEWCYRILVYTTPGTSAAEALNKQILDLTGAKTAIEDVAGKVVLITGASSGIGKHMAYEYAKRGAYLALVARRENRLREVAGVARFFGSPFALDVNFWGMVYCTYFAIPHLKQSRGKIIGISSSAAWLPVPRLSFYSASKAAVISFYETLRVEVGRDIGITIVTPGLVESEMTQGKFMSKDGGLYLDQELRDAMVSAMPIMPIDSAVKGIVRSACRGDRYATEPRWMRMAFYYKTLWPELVEWVNYLIGMTGSSSTDSFGKRLLELIGLKTWFYPESVRSQELWL 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8511387 8517588 - Cp4.1LG09g09540.1 Cpe09g00950 475316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00950 761 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 159 353 - -
Cpe09g00950 761 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 568 754 - -
Cpe09g00950 761 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 512 721 IPR036291 -
Cpe09g00950 761 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 374 510 - -
Cpe09g00950 761 PANTHER RETINOL DEHYDROGENASE-RELATED 159 353 - -
Cpe09g00950 761 PRINTS Glucose/ribitol dehydrogenase family signature 324 340 IPR002347 -
Cpe09g00950 761 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Cpe09g00950 761 PRINTS Glucose/ribitol dehydrogenase family signature 277 288 IPR002347 -
Cpe09g00950 761 PRINTS Glucose/ribitol dehydrogenase family signature 392 409 IPR002347 -
Cpe09g00950 761 PRINTS Glucose/ribitol dehydrogenase family signature 372 391 IPR002347 -
Cpe09g00950 761 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 511 568 - -
Cpe09g00950 761 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 196 486 IPR036291 -
Cpe09g00950 761 PANTHER RETINOL DEHYDROGENASE-RELATED 374 510 - -
Cpe09g00950 761 PANTHER RETINOL DEHYDROGENASE-RELATED 511 568 - -
Cpe09g00950 761 Pfam short chain dehydrogenase 201 352 IPR002347 -
Cpe09g00950 761 Pfam short chain dehydrogenase 517 557 IPR002347 -
Cpe09g00950 761 Pfam short chain dehydrogenase 569 652 IPR002347 -
Cpe09g00950 761 Gene3D - 496 565 - -
Cpe09g00950 761 Gene3D - 191 487 - -
Cpe09g00950 761 Gene3D - 567 727 - -
Cpe09g00950 761 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 599 627 IPR020904 GO:0016491
Cpe09g00950 761 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 612 631 IPR002347 -
Cpe09g00950 761 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 330 338 IPR002347 -
Cpe09g00950 761 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 277 288 IPR002347 -
Cpe09g00950 761 PANTHER RETINOL DEHYDROGENASE-RELATED 568 754 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00950 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101219132 499.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g01002 Cpe-Chr6:10148109 Cpe09g00950 Cpe-Chr9:8511387 7.54E-48 dispersed
Cpe09g00950 Cpe-Chr9:8511387 Cpe11g00716 Cpe-Chr11:5371890 2.70E-10 dispersed
Cpe20g00296 Cpe-Chr20:1657742 Cpe09g00950 Cpe-Chr9:8511387 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00950 Cpe_Chr09 FPKM 5.50937 6.170019 5.343179 4.899141 7.821014 6.989945 7.872622 13.116378 11.479387 11.85075