Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00953 ATGGAATCTATGTCAGTGAATGAAGTGGAAAGAACAAACCAATTCACTTCTGCTACACTTGTTTGGGAACACCTTCTTTCCCTTCATTCAGCTCCCTCTTTCCCTTTCATTTTTACTCTCTTCTTCCCCCCAATCTCCACCTTTTTGGGAACTTCCAAGTTCCAATCTTCTTGGAACACAGTTTTTGCAGAGACAGAGGTTGAGAAAATGGCATCATCAACCTCAGGATCATCGAAGAGAGCTCGAGGAGCTAACAATGCCGGGAGTCAACCAGTTTCTTGCCTTGTTGATGGCTGCAATTCAGATCTAAGCAACTGTCGGGATTACCACCGCCGTCATAAGGTTTGTGAGCTGCATTCTAAGACTCCTCAGGTTACCATTGGTGGCCTGAAACAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCATTCACTCGAGGAATTTGATGAGGGAAAAAGGAGCTGTCGGAAACGACTGGATGGCCACAACCGCCGTCGGAGGAAGCCTCAGACTGACCTCTTGCCTCGATCTGCTGGGCCTTTCTCGTATCATCAAGGTTCTCACTTGTTGCCATATACAAGCGCACAAGTTTACCCATCGACCACCGTGAGCAGCCACGGCTGGTCCTCCACCGGAGAGACAGCCGCCCTTCACAGGGACCAACAACTAAATTTCCTCGAAAAACAGAGCCTGTTTGTGGAACAATCCGACCACAGCAACAACTACAAAACGGCGCAAACACTGGCCTTCATGCACGGCGGCCCGACAACAACATGTCAACACCTCCTCCGGTCCATGAATACCCTGTCAGAAAACGGCGGCGGAGGCGGCGGCGGGGAAAGAAACAAGATGATTTATGACAGGTTCAGAATTGGCGTTAGTGAATCAGATTGTGCTCTCTCTCTTCTGTCATCACCACAGGCTCAGACTGATCATCAGCCACAGCAGCAGCCGCAGCCGCAGCCGCAGCAGGCGGAGAGTGGTTCTTCTGGGCATTTGGATTTGAGCAGAATCGAACAGCATCAGCGGAGCGCCGCCGTTTCTCTGCTGCAGCCATTGAACAACCACCACCACCACCACCACCACCATAGCCATAACAGTTATGAGAATTCTGATTCCGACAATCATGGAGGGGCCCTTAATTTCCCCGGGATCTTTGGAATTGCCTCCGAGAATGCTGGAAATGAATCCCCTTCCACCCTCCCATTTCATTGGGAGTAG 1218 50.66 MESMSVNEVERTNQFTSATLVWEHLLSLHSAPSFPFIFTLFFPPISTFLGTSKFQSSWNTVFAETEVEKMASSTSGSSKRARGANNAGSQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAGPFSYHQGSHLLPYTSAQVYPSTTVSSHGWSSTGETAALHRDQQLNFLEKQSLFVEQSDHSNNYKTAQTLAFMHGGPTTTCQHLLRSMNTLSENGGGGGGGERNKMIYDRFRIGVSESDCALSLLSSPQAQTDHQPQQQPQPQPQQAESGSSGHLDLSRIEQHQRSAAVSLLQPLNNHHHHHHHHSHNSYENSDSDNHGGALNFPGIFGIASENAGNESPSTLPFHWE 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8542517 8545123 + Cp4.1LG09g09480.1 Cpe09g00953 475319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00953 405 MobiDBLite consensus disorder prediction 305 332 - -
Cpe09g00953 405 MobiDBLite consensus disorder prediction 71 90 - -
Cpe09g00953 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 405 IPR044817 GO:0003677
Cpe09g00953 405 MobiDBLite consensus disorder prediction 355 375 - -
Cpe09g00953 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 59 405 - -
Cpe09g00953 405 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Cpe09g00953 405 Gene3D - 84 155 IPR036893 GO:0003677|GO:0005634
Cpe09g00953 405 MobiDBLite consensus disorder prediction 158 177 - -
Cpe09g00953 405 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Cpe09g00953 405 Pfam SBP domain 94 167 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00953 - - - cpep:111802519 747.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00953 Cpe20g00300 CCT
Cpe09g00953 Cpe20g00443 CCT
Cpe09g00953 Cpe20g00300 ECH
Cpe09g00953 Cpe20g00443 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00972 Cpe-Chr1:5787938 Cpe09g00953 Cpe-Chr9:8542517 2.17E-52 dispersed
Cpe02g01546 Cpe-Chr2:13114807 Cpe09g00953 Cpe-Chr9:8542517 6.82E-34 dispersed
Cpe03g00825 Cpe-Chr3:5142997 Cpe09g00953 Cpe-Chr9:8542517 4.02E-33 dispersed
Cpe04g01623 Cpe-Chr4:12582134 Cpe09g00953 Cpe-Chr9:8542517 3.45E-67 dispersed
Cpe09g00953 Cpe-Chr9:8542517 Cpe17g01068 Cpe-Chr17:8083301 3.29E-48 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe09g00953 Cpe-Chr9:8542517 4.28E-84 wgd
Cpe20g00300 Cpe-Chr20:1684871 Cpe09g00953 Cpe-Chr9:8542517 2.26E-155 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe09g00953 Cpe-Chr9:8542517 6.09E-43 wgd
Cpe04g00482 Cpe-Chr4:5477767 Cpe09g00953 Cpe-Chr9:8542517 3.16E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g121 . Blo11g00285 Bda02g00522 Bda09g01248 . . . . . . . Cma07g00232 . Car07g00197 Sed14g1466 Cpe09g00953 . Bhi03g00401 Tan03g2491 Cmetu11g0001 . Hepe04g1861 . . Cla01g02258 Cam01g2373 Cec04g2018 Cco04g2096 Clacu01g2393 Cmu01g2258 Cre04g1926 Cone1ag0172 Cone5ag1699 Cone6ag1002 Cone9ag1002 Lsi01g00303 Csa06g03638 Chy12g00921 . . . . Bda07g00989 . Bpe08g00382 Bma07g00383 . . . Cmo07g00228 Cma13g00633 Cma18g00382 Car13g00518 Car18g00359 . Cpe20g00443 Bhi08g02282 . . Lac10g0897 . . . Cla03g00760 Cam03g0628 Cec03g0605 Cco03g0635 Clacu03g0803 Cmu03g1400 Cre03g0912 . Csa01g01244 Chy02g00287 Cme12g01333
Vvi17g97 . . . Bda15g00631 . . . . . . . . . . . Cpe20g00300 . Bhi02g00671 Tan09g2020 . . . . . . . . . . . . . . . . Lsi02g00513 . Chy12g01157 . . . . . . . . . . . . . . Car13g00660 . Cpe09g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011451 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50032 PF03110 SBP 6.80E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00953 Cpe_Chr09 FPKM 12.86326 14.030624 4.162518 3.865168 27.568338 30.927616 28.421368 1.85743 1.823404 1.594966