Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00960 ATGGAGGTGGAATTGAAAGAGATGCAGGACGATCTCGAATCCCTGAAGCAGTCGCTAACCGATGTGTCTCTTCGAGGTTCCGTTGATAAGCTTCAATTGCATTTAGAACGTCTCACAAATCTTTCAAAGTCAGGACCAGTTCGCCGAACGAAAGTCAAGGACATGAGTGCTGAGGTGGTAGATAGCAACCCCTACAGTAGGCTTATGGCTCTTCAGAGGATGGGCATTGTAGAAAACTATGAAAGGATACGGGAGTTTTCTGTTGCCATAGTTGGAATTGGAGGTGTTGGAAGTGTTGCAGCTGAGATGTTGACGAGGTGCGGAATAGGTCGCTTGTTGTTATATGATTATGATAAAGTGGAGTTAGCCAACATGAATAGACTCTTCTTTCGCCCTGAGCAGGTTGGTATGACAAAAACTGATGCTGCAGTACAGACTCTTGTAGATATAAATCCCGATGTTGTACTTGAGAGCTATACGCTGAATATCACCACCGTGCAAGGTTTTGAAACTTTTATTTCAAGTTTGAGAAACAAATCATTCTCCCCAGCTAAAGAAGGCAGTGGAGTGGATCTTGTATTAAGTTGTGTTGATAATTATGAAGCAAGGATGGCTGTTAATCAGGCTTGCAATGAGCTAAATCAGATATGGATGGAATCTGGCGTTTCGGAGGACGCTGTTTCTGGTCATATTCAGTTGCTTATTCCTGGTGAAACTGCCTGTTTTGCTTGCGCACCTCCTCTGGTTGTAGCATCTGGCATAGACGAACGAACACTCAAACGAGAAGGGGTTTGTGCTGCATCTTTACCTACAACAATGGGAGTTGTTGCAGGCCTATTGGTGCAAAACACCCTCAAGTTTCTGCTAAAGTTTGGACACGTTTCTCCATACTTGGGATATAATTCTCTAAAAGACTACTTTCCGACCATGGAAATGAGGCCCAACCCTCAGTGTTCAAATGTGGCTTGTCTGGAAAGACAGAAGGAATACATTATTGCAAAACCTGCACGAGATGCTGCAGCTAAGGCAAAGATGGAAGCAGAAGCATTGACCGTTGAAGAAATCCCACTGCATGCTGATAATGAATGGAATATAAGTGTTGTTGATGATGTTGAGATCGAAATCATGGGAGCAACCAGTTCAGGTCTAGTTCGCGAGCTTCCAAATGCAGATGAGCAGCATCCGCCTCCCACTGAATCTACGGCCCCTTTCTTGGATGACCTTGAAGATCTGAAGAGACAACTGGAGGCCCTTAATTCTTGA 1263 44.26 MEVELKEMQDDLESLKQSLTDVSLRGSVDKLQLHLERLTNLSKSGPVRRTKVKDMSAEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLVDINPDVVLESYTLNITTVQGFETFISSLRNKSFSPAKEGSGVDLVLSCVDNYEARMAVNQACNELNQIWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGLLVQNTLKFLLKFGHVSPYLGYNSLKDYFPTMEMRPNPQCSNVACLERQKEYIIAKPARDAAAKAKMEAEALTVEEIPLHADNEWNISVVDDVEIEIMGATSSGLVRELPNADEQHPPPTESTAPFLDDLEDLKRQLEALNS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8575118 8581580 - Cp4.1LG09g09690.1 Cpe09g00960 475326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00960 420 Coils Coil 405 420 - -
Cpe09g00960 420 MobiDBLite consensus disorder prediction 386 407 - -
Cpe09g00960 420 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 419 IPR045886 -
Cpe09g00960 420 Coils Coil 5 25 - -
Cpe09g00960 420 Pfam ThiF family 65 319 IPR000594 -
Cpe09g00960 420 CDD ThiF_MoeB_HesA_family 64 312 - -
Cpe09g00960 420 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 56 324 IPR035985 GO:0008641
Cpe09g00960 420 PANTHER BNAANNG16230D PROTEIN 1 419 - -
Cpe09g00960 420 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 88 116 IPR029752 -
Cpe09g00960 420 Gene3D - 82 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00960 K12164 UBA5, UBE1DC1; ubiquitin-like modifier-activating enzyme 5 - csv:101204069 744.962
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00960 Cpe20g00306 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00960 Cpe-Chr9:8575118 Cpe16g00263 Cpe-Chr16:4633855 2.84E-14 dispersed
Cpe08g00078 Cpe-Chr8:502396 Cpe09g00960 Cpe-Chr9:8575118 2.33E-11 transposed
Cpe20g00306 Cpe-Chr20:1712984 Cpe09g00960 Cpe-Chr9:8575118 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g108 . Blo16g00267 . . . Bpe13g00202 Bma06g00258 . Cmo13g00837 Cmo18g00219 . . . . . Cpe20g00306 . . . . . . . . . . . . . . . Cone2ag0976 . . . Lsi02g00504 Csa01g00965 Chy12g01168 Cme12g01590 . . Bda11g01600 . . . . . Sed08g2435 . . Cma13g00805 Cma18g00317 Car13g00653 Car18g00230 Cpe09g00960 . Bhi08g01488 Tan05g2965 Cmetu12g0210 Lac10g0584 Hepe07g2110 . . Cla03g00354 Cam03g0373 Cec03g0360 Cco03g0376 Clacu03g0372 Cmu03g0978 Cre03g0670 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009587 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00960 Cpe_Chr09 FPKM 24.031719 19.081541 23.491116 23.013365 31.703295 27.355499 32.127274 24.565046 21.751719 25.561386