Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00966 ATGGCTGTCGCACTCCATGATGTCAAATCGGCAGCCGGTTTGAAAAAGCTTGATGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGACGTTACCGTTTACGAGAGTCTCTCCAAACCCGTATCCAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACCCCACCGGGCGCGGACGCAAAGGCTGCTGATGACGATGACGACGATATGGATCTTTTCGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCATCAGTTCTGATGGATATCAAACCATGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCCGTGAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAGCTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATTATGCTCACAATTGTGGATGACTTAGTGTCTGTTGACACTTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATCATCCAGTCTCGTCTTCTCATTTTTGAGTTGCAGCATCCCCGCCGGCGAGAAATCTCTTCAGTTTGAAATGGCGGTCGCACTCCATGATGTCAAATCGGCAGCTGGTTTGAAAAAACTTGACGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAGAGTCTCTCCAAACCCGTATCCAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCTGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACCCCACCGGCCGGGGACGCAAAGGCTGCTGCTGATGACGACGACGACGATATGGATCTTTTTGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCAGAGGAGCGTGCAGCTTCCATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCATCAGTTCTGATGGATATTAAACCCTGGGATGATGAGACCGACATGAAGAAACTTGAAGAGGCCGTAAGAAGCGTTGAGATGGAAGGTTTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACTTAGTGTCTGTTGACACTTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATTCGATGAGCATTTGATTGACGCTTCATTTGCTTCCTCGAGATCGTTTTTATCCCACAATTGCCGTCATTCAATTTTTCCTAATCTTCAGAGTGATAGAATAGAAGAATCATTCATGGACATGTCAAGCAGAATATTACATGATATCGTTCATGTGGAAAAGGATGCAGGTGTATGA 1593 45.7 MAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPGADAKAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEERLTVEPINEHVQSCDIVAFNKISSSLVFSFLSCSIPAGEKSLQFEMAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPAGDAKAAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEERLTVEPINEHVQSCDIVAFNKIFDEHLIDASFASSRSFLSHNCRHSIFPNLQSDRIEESFMDMSSRILHDIVHVEKDAGV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8622220 8627862 + Cp4.1LG09g09650.1 Cpe09g00966 475332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00966 530 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cpe09g00966 530 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 248 474 - -
Cpe09g00966 530 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 226 - -
Cpe09g00966 530 Coils Coil 355 375 - -
Cpe09g00966 530 Gene3D - 3 75 - -
Cpe09g00966 530 Gene3D - 225 322 - -
Cpe09g00966 530 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 248 474 - -
Cpe09g00966 530 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 461 472 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cpe09g00966 530 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 226 - -
Cpe09g00966 530 MobiDBLite consensus disorder prediction 357 377 - -
Cpe09g00966 530 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Cpe09g00966 530 Pfam EF-1 guanine nucleotide exchange domain 385 472 IPR014038 GO:0003746|GO:0006414
Cpe09g00966 530 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Cpe09g00966 530 Coils Coil 107 127 - -
Cpe09g00966 530 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Cpe09g00966 530 SMART EF1_GNE_2 383 472 IPR014038 GO:0003746|GO:0006414
Cpe09g00966 530 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 347 355 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cpe09g00966 530 SUPERFAMILY GST C-terminal domain-like 10 69 IPR036282 -
Cpe09g00966 530 SUPERFAMILY eEF-1beta-like 380 472 IPR036219 -
Cpe09g00966 530 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Cpe09g00966 530 SUPERFAMILY GST C-terminal domain-like 255 316 IPR036282 -
Cpe09g00966 530 CDD EF1B 381 472 IPR014038 GO:0003746|GO:0006414
Cpe09g00966 530 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cpe09g00966 530 Gene3D - 128 224 IPR014717 -
Cpe09g00966 530 Gene3D - 376 472 IPR014717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00966 Cpe-Chr9:8622220 Cpe20g00309 Cpe-Chr20:1735866 2.21E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00966 K03232 - csv:101215827 365.54