Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00968 ATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCATATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCTTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGCTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGCCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGTTTGCTGGATGTGGAACTTGTGGGAACTGCACAGCCAATGTTATACTGTCTCATAGAACATAAGTCGCCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATTTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGGAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGTCAATTATTTGCATCAACAGGACACAAGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGGAGAATAACCAACTTGGTAGCATTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAACCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCGGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCAGTTCACTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCACAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCAATTGA 1341 44.97 MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIWDIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVMEMNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8632537 8636689 + Cp4.1LG09g09590.1 Cpe09g00968 475334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00968 446 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 8 437 - -
Cpe09g00968 446 Pfam WD domain, G-beta repeat 257 286 IPR001680 GO:0005515
Cpe09g00968 446 Pfam WD domain, G-beta repeat 121 142 IPR001680 GO:0005515
Cpe09g00968 446 PRINTS G protein beta WD-40 repeat signature 183 197 IPR020472 -
Cpe09g00968 446 PRINTS G protein beta WD-40 repeat signature 129 143 IPR020472 -
Cpe09g00968 446 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Cpe09g00968 446 SMART WD40_4 198 237 IPR001680 GO:0005515
Cpe09g00968 446 SMART WD40_4 107 142 IPR001680 GO:0005515
Cpe09g00968 446 SMART WD40_4 155 196 IPR001680 GO:0005515
Cpe09g00968 446 SMART WD40_4 249 286 IPR001680 GO:0005515
Cpe09g00968 446 SMART WD40_4 289 329 IPR001680 GO:0005515
Cpe09g00968 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Cpe09g00968 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Cpe09g00968 446 SUPERFAMILY WD40 repeat-like 88 323 IPR036322 GO:0005515
Cpe09g00968 446 SUPERFAMILY WD40 repeat-like 10 116 IPR036322 GO:0005515
Cpe09g00968 446 MobiDBLite consensus disorder prediction 423 446 - -
Cpe09g00968 446 PANTHER WD-REPEAT PROTEIN 18 8 437 IPR045227 -
Cpe09g00968 446 Gene3D - 4 145 IPR015943 GO:0005515
Cpe09g00968 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 205 IPR001680 GO:0005515
Cpe09g00968 446 ProSitePatterns Trp-Asp (WD) repeats signature. 183 197 IPR019775 -
Cpe09g00968 446 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Cpe09g00968 446 Gene3D - 147 339 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00968 K14829 IPI3; pre-rRNA-processing protein IPI3 - csv:101212515 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00186 Cpe-Chr2:953497 Cpe09g00968 Cpe-Chr9:8632537 1.50E-09 dispersed
Cpe06g00165 Cpe-Chr6:902160 Cpe09g00968 Cpe-Chr9:8632537 7.19E-06 dispersed
Cpe09g00968 Cpe-Chr9:8632537 Cpe14g00358 Cpe-Chr14:2182829 5.91E-19 dispersed
Cpe09g00968 Cpe-Chr9:8632537 Cpe02g00162 Cpe-Chr2:825548 1.13E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00968 Cpe_Chr09 FPKM 3.791286 4.924829 8.80001 9.321847 7.109907 6.954289 8.136679 12.543201 11.002549 10.90754