Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00974 CCACGCAATTTCACTCTTCCGAGCTCTCAACTTACAGTAATGGCGGATCGAGATCGGAAGCTCAAAGCGGCGGTACATTCCGTTGATCCTCGGAGTGGTTTCTGTCCTCAAACCAAGATTTTCCATAGCCTCCGTCCACCGCTCTCGGTTCCGCCGATATCTCAGCCTCTCACTGTTGTCGGACACGCACTTTCTATTCTTCGATCATCCCCTCCTCCGGTGAACACTACCGCTCTTGTTGATTTCGACTCAGGTGACAGTATCTCCTACGGTATTTTCCTCTGCCAAATCCGAAACCTCGCCTTTAATCTTAGAACTGTTTTCTCCCTCTCCAAGGGTCAAGTTGCTTTTATTCTTTCGCCGACGTCTCTGCGAGTTCCTGTGTTGTATTTTGCTCTGTTATCGCTCGGTGTTGTTGTCTCTCCGGCTAATCCAATCGGTTCTGAATCGGAGATTGCTCACCAGGTTCGACTCTGTAAACCGGACATTGCCTTCGTTACTTCCTCAACGGCGTCCAAGCTTTCGAGGGTTCCAGTTTCCACTGTCTTGATTGATTCAATGAAGTTTCTATCTATGATGAATGAAAGCAATCTATCGAATGGAGTGGATGATGATGCTGTTGATGTCAAAGTCGATCAAAACGACTCGGCGGCAATTTTGTACTCGTCAGGGACTACCGGGCGAGTGAAAGGAGTCTTACTGTCTCACAGGAACCTCATAGCGGCGATCTCTAGTGTTATGACATTAGAGGCGACGGCCGACGAAAGAGAGACGGAGCCGCATCCCGTTTCTCTGTACCTGTTACCTATGTTCCATGTTTTCGGATTCTATATGATGATTCGATCGATTTCAGAAGGCCATACGCTGGTTCTGATGCGAAAGTTCGGTTTCGAGGAAATGTTAAGAGCCGTGGAGAAGTATAGGGTTACATACATCCCGGTTTCTCCCCCGCTGGTGGTGGCGATGGTCAAGTCGGAGCTGGTGGCCAAGTACGATCTCAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGGAAAGAAGTCGTCGATAAATTCCATGAAAAGTTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGCAGCGGCGGCAAGGACTGTGGGGCCTGAAGAATGCAGTAATACAAGTTCAGTAGGTCGCTTATCTGAAAATCTGGAAGCCAAAATAGTGGATCCTGCAACTGGAGAGGCCTTACCTCCTGGTCACAAGGGTGAGCTTTGGCTGCGAGGCCCAGGAATCATGAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCAGCTGAACTTGAACATTTACTTCAATCCAACCCCGAGATCGCCGACGCTGCTGTTGCACCGTACAAGAAAATCCGGAGGGTGTCTTTTGTGAACACGATCCCGAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTATCAAACATGCGCTCTCTCATGGTTCTAGCAAGGCAAGGAAGCCTTTATCTTACTATCTTTAG 1521 48.65 PRNFTLPSSQLTVMADRDRKLKAAVHSVDPRSGFCPQTKIFHSLRPPLSVPPISQPLTVVGHALSILRSSPPPVNTTALVDFDSGDSISYGIFLCQIRNLAFNLRTVFSLSKGQVAFILSPTSLRVPVLYFALLSLGVVVSPANPIGSESEIAHQVRLCKPDIAFVTSSTASKLSRVPVSTVLIDSMKFLSMMNESNLSNGVDDDAVDVKVDQNDSAAILYSSGTTGRVKGVLLSHRNLIAAISSVMTLEATADERETEPHPVSLYLLPMFHVFGFYMMIRSISEGHTLVLMRKFGFEEMLRAVEKYRVTYIPVSPPLVVAMVKSELVAKYDLSSLQILGCGGAPLGKEVVDKFHEKFPNVEIIQGYGLTESSAAAARTVGPEECSNTSSVGRLSENLEAKIVDPATGEALPPGHKGELWLRGPGIMKELIKYKAYQVPPAELEHLLQSNPEIADAAVAPYKKIRRVSFVNTIPKSPAGKILRRELIKHALSHGSSKARKPLSYYL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8675363 8681070 + Cp4.1LG09g09760.1 Cpe09g00974 475340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00974 506 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Cpe09g00974 506 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 43 429 - -
Cpe09g00974 506 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 427 461 - -
Cpe09g00974 506 Gene3D - 90 235 - -
Cpe09g00974 506 Gene3D - 432 495 IPR045851 -
Cpe09g00974 506 Gene3D - 85 384 - -
Cpe09g00974 506 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 43 429 - -
Cpe09g00974 506 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 427 461 - -
Cpe09g00974 506 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 458 488 - -
Cpe09g00974 506 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 458 488 - -
Cpe09g00974 506 Gene3D Luciferase; Domain 3 385 429 - -
Cpe09g00974 506 Pfam AMP-binding enzyme 75 432 IPR000873 -
Cpe09g00974 506 SUPERFAMILY Acetyl-CoA synthetase-like 75 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00974 K01904 4CL; 4-coumarate--CoA ligase [EC:6.2.1.12] - csv:101211791 726.857
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00974 Cpe20g00318 CCT
Cpe09g00974 Cpe20g00318 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00598 Cpe-Chr9:4145298 Cpe09g00974 Cpe-Chr9:8675363 1.98E-29 dispersed
Cpe09g00974 Cpe-Chr9:8675363 Cpe15g00179 Cpe-Chr15:1464272 2.65E-81 dispersed
Cpe01g01259 Cpe-Chr1:7535054 Cpe09g00974 Cpe-Chr9:8675363 1.39E-24 transposed
Cpe11g00592 Cpe-Chr11:3543440 Cpe09g00974 Cpe-Chr9:8675363 4.48E-10 transposed
Cpe20g00318 Cpe-Chr20:1796227 Cpe09g00974 Cpe-Chr9:8675363 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g149 . Blo16g00263 . . . Bpe13g00206 Bma06g00250 . Cmo13g00825 Cmo18g00200 . . . . . Cpe20g00318 . . . . . . . . . . . . . . . . Cone16ag0032 . . Lsi02g00484 Csa01g00946 Chy12g01184 Cme12g01605 . . Bda11g01605 . . . . . . . . Cma13g00793 . Car13g00641 Car18g00217 Cpe09g00974 . . . . . . . . Cla03g00341 Cam03g0357 Cec03g0348 Cco03g0362 Clacu03g0358 Cmu03g0963 Cre03g0656 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01008 CCT 1 503 Monolignol Biosynthesis Gene Families AT2G30490 86.7 1.0e-261 899.4
Cpe16g00690 CCT,CST 1 503 Monolignol Biosynthesis Gene Families AT2G30490 85.7 3.2e-260 894.4
Cpe02g01119 CCT,CST 1 530 Monolignol Biosynthesis Gene Families AT2G30490 74.2 5.2e-234 807.4
Cpe11g00652 . 948 1426 Monolignol Biosynthesis Gene Families AT2G30490 63.4 7.2e-183 637.5
Cpe04g00104 . 15 501 Monolignol Biosynthesis Gene Families AT4G36220 66.1 2.0e-196 682.6
Cpe19g00843 . 2 300 Monolignol Biosynthesis Gene Families AT4G36220 67.0 1.6e-113 407.1
Cpe03g00440 . 5 508 Monolignol Biosynthesis Gene Families AT2G40890 79.2 3.5e-246 847.8
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT1G20510 67.4 1.1e-84 311.2
Cpe02g01315 . 1 507 Monolignol Biosynthesis Gene Families AT4G05160 58.6 1.0e-179 627.1
Cpe20g00318 CCT,ECH 24 531 Monolignol Biosynthesis Gene Families AT5G63380 57.2 9.2e-163 570.9
Cpe09g00974 CCT,ECH 28 497 Monolignol Biosynthesis Gene Families AT5G63380 52.4 6.8e-142 501.5
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT1G20510 67.4 1.1e-84 311.2
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT5G38120 54.9 1.4e-63 241.1
Cpe15g00179 . 29 538 Monolignol Biosynthesis Gene Families AT4G19010 56.5 2.5e-168 589.3
Cpe05g01008 CCT 1 503 Monolignol Biosynthesis Gene Families AT2G30490 86.7 1.0e-261 899.4
Cpe16g00690 CCT,CST 1 503 Monolignol Biosynthesis Gene Families AT2G30490 85.7 3.2e-260 894.4
Cpe02g01119 CCT,CST 1 530 Monolignol Biosynthesis Gene Families AT2G30490 74.2 5.2e-234 807.4
Cpe11g00652 . 948 1426 Monolignol Biosynthesis Gene Families AT2G30490 63.4 7.2e-183 637.5
Cpe12g00779 . 1 430 Monolignol Biosynthesis Gene Families AT5G48930 78.3 1.5e-205 712.6
Cpe17g00636 . 1 434 Monolignol Biosynthesis Gene Families AT5G48930 74.8 2.4e-195 678.7
Cpe03g00440 . 5 508 Monolignol Biosynthesis Gene Families AT2G40890 79.2 3.5e-246 847.8
Cpe15g00488 . 9 249 Monolignol Biosynthesis Gene Families AT4G34050 90.9 1.2e-129 459.9
Cpe04g00280 . 9 186 Monolignol Biosynthesis Gene Families AT4G34050 67.6 2.7e-86 315.8
Cpe09g00585 . 324 543 Monolignol Biosynthesis Gene Families AT4G34050 56.4 1.4e-66 250.4
Cpe09g00585 . 91 277 Monolignol Biosynthesis Gene Families AT1G24735 61.5 9.2e-62 233.8
Cpe15g00488 . 63 248 Monolignol Biosynthesis Gene Families AT1G24735 54.3 1.3e-52 203.4
Cpe01g00580 . 74 294 Monolignol Biosynthesis Gene Families AT3G61990 72.9 2.7e-86 315.8
Cpe01g00580 . 74 282 Monolignol Biosynthesis Gene Families AT3G62000 73.7 4.1e-84 308.9
Cpe09g00585 . 911 1139 Monolignol Biosynthesis Gene Families AT1G67990 61.6 6.4e-78 287.7
Cpe15g00488 . 23 248 Monolignol Biosynthesis Gene Families AT1G67990 52.6 6.9e-64 241.1
Cpe09g00585 . 114 277 Monolignol Biosynthesis Gene Families AT1G67980 54.9 1.6e-43 172.9
Cpe15g00488 . 23 248 Monolignol Biosynthesis Gene Families AT4G26220 60.2 9.3e-77 283.9
Cpe09g00585 . 322 542 Monolignol Biosynthesis Gene Families AT4G26220 54.2 3.1e-64 242.3
Cpe12g00773 . 127 347 Monolignol Biosynthesis Gene Families AT1G15950 81.9 8.8e-102 367.1
Cpe03g00914 . 100 321 Monolignol Biosynthesis Gene Families AT1G15950 72.1 1.8e-91 332.8
Cpe02g01619 . 77 287 Monolignol Biosynthesis Gene Families AT1G15950 69.3 1.5e-80 296.6
Cpe03g00913 . 96 267 Monolignol Biosynthesis Gene Families AT1G15950 69.8 2.4e-67 252.7
Cpe12g00773 . 29 304 Monolignol Biosynthesis Gene Families AT1G80820 75.0 1.8e-119 426.0
Cpe03g00914 . 8 275 Monolignol Biosynthesis Gene Families AT1G80820 74.3 3.4e-115 411.8
Cpe02g01619 . 299 550 Monolignol Biosynthesis Gene Families AT1G80820 68.4 8.2e-101 364.0
Cpe03g00915 . 42 385 Monolignol Biosynthesis Gene Families AT1G80820 53.0 1.7e-90 329.7
Cpe03g00913 . 9 221 Monolignol Biosynthesis Gene Families AT1G80820 57.4 1.5e-81 300.1
Cpe04g00104 . 15 501 Monolignol Biosynthesis Gene Families AT4G36220 66.1 2.0e-196 682.6
Cpe19g00843 . 2 300 Monolignol Biosynthesis Gene Families AT4G36220 67.0 1.6e-113 407.1
Cpe04g00104 . 27 501 Monolignol Biosynthesis Gene Families AT5G04330 58.4 1.1e-165 580.5
Cpe19g00843 . 1 300 Monolignol Biosynthesis Gene Families AT5G04330 56.2 2.3e-88 323.6
Cpe09g00009 . 5 374 Monolignol Biosynthesis Gene Families AT5G54160 71.9 5.6e-153 537.7
Cpe08g00826 . 322 663 Monolignol Biosynthesis Gene Families AT5G54160 54.1 6.0e-107 384.8
Cpe16g00065 . 33 333 Monolignol Biosynthesis Gene Families AT4G39330 72.1 2.7e-132 468.8
Cpe10g00530 . 1 301 Monolignol Biosynthesis Gene Families AT4G39330 62.5 5.7e-114 407.9
Cpe02g00059 . 8 304 Monolignol Biosynthesis Gene Families AT4G39330 56.2 2.3e-99 359.4
Cpe05g01099 . 1039 1259 Monolignol Biosynthesis Gene Families AT4G39330 64.5 1.2e-90 330.5
Cpe05g00755 . 12 298 Monolignol Biosynthesis Gene Families AT4G39330 50.7 1.4e-75 280.4
Cpe01g00421 . 55 409 Monolignol Biosynthesis Gene Families AT3G19450 75.0 2.6e-158 555.4
Cpe14g00281 . 88 444 Monolignol Biosynthesis Gene Families AT3G19450 74.0 2.9e-157 552.0
Cpe16g00065 . 44 388 Monolignol Biosynthesis Gene Families AT3G19450 50.4 7.4e-105 377.9
Cpe10g00530 . 12 356 Monolignol Biosynthesis Gene Families AT3G19450 52.2 5.9e-102 368.2
Cpe10g00530 . 4 294 Monolignol Biosynthesis Gene Families AT4G37970 61.5 7.6e-108 387.5
Cpe16g00065 . 36 329 Monolignol Biosynthesis Gene Families AT4G37970 59.2 5.1e-104 374.8
Cpe02g00059 . 14 294 Monolignol Biosynthesis Gene Families AT4G37970 54.8 2.2e-91 332.8
Cpe14g00281 . 89 378 Monolignol Biosynthesis Gene Families AT4G37970 50.7 1.2e-81 300.4
Cpe10g00530 . 12 294 Monolignol Biosynthesis Gene Families AT4G37980 71.7 3.6e-118 421.8
Cpe16g00065 . 393 668 Monolignol Biosynthesis Gene Families AT4G37980 62.8 4.3e-103 371.7
Cpe02g00059 . 14 294 Monolignol Biosynthesis Gene Families AT4G37980 55.9 1.0e-88 323.9
Cpe14g00281 . 94 375 Monolignol Biosynthesis Gene Families AT4G37980 52.3 3.0e-80 295.8
Cpe01g00421 . 55 336 Monolignol Biosynthesis Gene Families AT4G37980 51.1 3.7e-78 288.9
Cpe05g01099 . 1039 1255 Monolignol Biosynthesis Gene Families AT4G37980 55.7 1.1e-74 277.3
Cpe05g00755 . 8 280 Monolignol Biosynthesis Gene Families AT4G37980 50.2 9.4e-74 274.2
Cpe10g00530 . 12 360 Monolignol Biosynthesis Gene Families AT4G37990 70.8 1.0e-143 506.9
Cpe16g00065 . 44 390 Monolignol Biosynthesis Gene Families AT4G37990 63.4 2.9e-130 462.2
Cpe02g00059 . 14 354 Monolignol Biosynthesis Gene Families AT4G37990 57.5 6.6e-114 407.9
Cpe01g00421 . 61 410 Monolignol Biosynthesis Gene Families AT4G37990 53.4 1.5e-105 380.2
Cpe14g00281 . 99 443 Monolignol Biosynthesis Gene Families AT4G37990 53.0 8.0e-104 374.4
Cpe05g01099 . 1039 1316 Monolignol Biosynthesis Gene Families AT4G37990 61.3 1.4e-103 373.6
Cpe01g00421 . 55 409 Monolignol Biosynthesis Gene Families AT4G34230 77.5 1.5e-163 572.8
Cpe14g00281 . 88 442 Monolignol Biosynthesis Gene Families AT4G34230 74.4 1.9e-158 555.8
Cpe16g00065 . 390 727 Monolignol Biosynthesis Gene Families AT2G21730 71.1 9.8e-145 510.4
Cpe10g00530 . 11 361 Monolignol Biosynthesis Gene Families AT2G21730 61.5 2.1e-131 466.1
Cpe02g00059 . 14 354 Monolignol Biosynthesis Gene Families AT2G21730 58.2 8.7e-117 417.5
Cpe05g01099 . 1039 1314 Monolignol Biosynthesis Gene Families AT2G21730 63.0 2.5e-108 389.4
Cpe01g00421 . 60 411 Monolignol Biosynthesis Gene Families AT2G21730 51.1 7.9e-102 367.9
Cpe14g00281 . 99 444 Monolignol Biosynthesis Gene Families AT2G21730 50.6 7.9e-102 367.9
Cpe16g00065 . 390 727 Monolignol Biosynthesis Gene Families AT2G21890 70.1 7.0e-143 504.2
Cpe10g00530 . 11 361 Monolignol Biosynthesis Gene Families AT2G21890 61.1 1.1e-130 463.8
Cpe02g00059 . 14 354 Monolignol Biosynthesis Gene Families AT2G21890 57.8 1.5e-116 416.8
Cpe05g01099 . 1039 1314 Monolignol Biosynthesis Gene Families AT2G21890 62.5 3.6e-107 385.6
Cpe01g00421 . 60 411 Monolignol Biosynthesis Gene Families AT2G21890 51.3 5.4e-103 371.7
Cpe14g00281 . 99 444 Monolignol Biosynthesis Gene Families AT2G21890 50.7 7.1e-103 371.3
Cpe05g00755 . 2 355 Monolignol Biosynthesis Gene Families AT1G72680 75.1 1.9e-161 565.8
Cpe16g00065 . 48 390 Monolignol Biosynthesis Gene Families AT1G72680 54.8 3.9e-103 372.1
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT1G20510 67.4 1.1e-84 311.2
Cpe15g00179 . 29 538 Monolignol Biosynthesis Gene Families AT4G19010 56.5 2.5e-168 589.3
Cpe02g01315 . 1 507 Monolignol Biosynthesis Gene Families AT4G05160 58.6 1.0e-179 627.1
Cpe20g00318 CCT,ECH 24 531 Monolignol Biosynthesis Gene Families AT5G63380 57.2 9.2e-163 570.9
Cpe09g00974 CCT,ECH 28 497 Monolignol Biosynthesis Gene Families AT5G63380 52.4 6.8e-142 501.5
Cpe06g00035 . 11 244 Monolignol Biosynthesis Gene Families AT5G38120 54.9 1.4e-63 241.1
Cpe17g00233 . 4 321 Monolignol Biosynthesis Gene Families AT1G76470 57.1 4.6e-98 355.1
Cpe01g00793 CST 7 325 Monolignol Biosynthesis Gene Families AT2G02400 69.9 4.4e-138 488.0
Cpe17g00233 . 1 322 Monolignol Biosynthesis Gene Families AT2G33590 65.6 1.8e-118 422.9
Cpe17g00231 . 10 372 Monolignol Biosynthesis Gene Families AT2G33590 58.0 1.8e-110 396.4
Cpe17g00233 . 4 322 Monolignol Biosynthesis Gene Families AT2G33600 63.8 1.1e-115 413.7
Cpe17g00231 . 13 372 Monolignol Biosynthesis Gene Families AT2G33600 56.5 4.4e-109 391.7
Cpe20g00885 . 5 326 Monolignol Biosynthesis Gene Families AT5G58490 69.6 6.5e-137 484.2
Cpe08g01069 . 10 370 Monolignol Biosynthesis Gene Families AT3G53140 71.9 2.1e-152 535.8
Cpe09g00009 . 189 372 Monolignol Biosynthesis Gene Families AT5G37170 50.5 5.5e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002494 1 2 2 1 2 2 2 1 2 2 1 2 2 2 2 2 2 4 2 2 2 1 2 4 2 1 2 2 1 4 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00974 Cpe_Chr09 FPKM 25.650192 27.505806 26.954311 30.13133 25.89924 21.045595 23.12509 36.897011 34.479305 36.468655