Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00978 ATGGCCAAGATCAAGATCGGAATCAACGGATTCGGAAGAATCGGGAGGTTGGTTGCTAGAGTTGCTTTACAGAGAGACGATGTGGAACTCGTTGCTGTTAACGATCCTTTCATCACGACTGATTACATGACCTACATGTTCAAGTATGACAGTGTTCATGGCCTCTGGAAGCACAGTGACGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAGAAGGCTGTCACTGTTTTTGGCGTCAGAAACCCGGAGGAGATCCCATGGGGTGAGACCGGAGCGGAATACATTGTAGAGTCCACTGGTGTTTTCACAGACAAAGAAAAGGCTGCTGCTCATTTGAAGGTTATCCATGACAGGTTTGGCATCGTTGAGGGTCTGATGACCACTGTTCACTCAATCACCGCCACACAAAAAACTGTTGATGGGCCATCTAGCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATCCCTAGCAGCACTGGAGCTGCCAAGGCCGTTGGCAAAGTCCTTCCAGCATTGAATGGTAAATTGACCGGAATGTCTTTCCGTGTTCCCACGATCGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGATATTAAGGCAGCCATCAAGGAAGAGTCTGTGGGAAAATTGAAGGGAATTTTGGGCTACACTGAAGACGATGTTGTGTCCTCTGACTTTGTTGGCGACACCAGGTCAAGCATCTTCGATGCCAAGGCCGGGATTGCATTGAACGACCAATTTGTGAAGCTCGTCTCGTGGTACGACAACGAAGTAGGATACAGTTCTCGTGTCCTTGACTTGATCATCCATGTCGCATCTACCCAGTTCCCCATTTCTTTCAGCTACCTCATATGGACCATACATTGCCCGGTTCCGTTTCTGACCAGATTCGGAAGGATTGGGAGGTTGGTAGCTAGGGTTGCTCTGCAGAGAAATGATGTTGAACTTGTTGCTGTTAACGATCCTTTTATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCAGTGGAAGCATCAAGATGTGAAGGTCAAGGATTCTAATACCCTTCTCTTTGGTGAGCAGGCTGTTAAAGTTTTTGGCCTCAGGAATCCTGAGGAGATCCCATGGGCTGAGGCGGGAGCTGATTATATTGTAGAGTCCACTGGTGTTTTCACTGACAAAGACAAGGCTGCTGCCCATTTGAAGGTCATTAATGATAGATTTGGCATTGTTGAGGGCCTCATGACCACTGTTCACTCTATGACTGCCACCCAAAAGACCGTCGATGGACCATCTAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGTACTGGAGCTGCTAAGGCCGTCGGCAAAGTCCTGCCCGCATTGAATGGAAAATTGACTGGAATGGCTTTCCGTGTTCCTACCGTTGATGTCTCAGTCGTTGACCTTACTGTAAGGCTGGAGAAGGCAGCATCCTATGAAGATATTAAGGCAGCCATCAAGGAGGAGTCTGAGGGGAAGTTGAAAGGAATTTTGGGTTACACCGAAGATGAGGTGGTGTCCACTGATTTTGCCGGGATTGCACTGAACGATCATTTTGTGAAGCTCGTCACGTGGTACGACAACGAGTTAGGCTACAGTACTCGTGTTATCGACCTGATTTCTCACGTCGCATCTGTCAATTAA 1728 47.63 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGLWKHSDVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKEKAAAHLKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTIDVSVVDLTVRLEKKASYEDIKAAIKEESVGKLKGILGYTEDDVVSSDFVGDTRSSIFDAKAGIALNDQFVKLVSWYDNEVGYSSRVLDLIIHVASTQFPISFSYLIWTIHCPVPFLTRFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHQDVKVKDSNTLLFGEQAVKVFGLRNPEEIPWAEAGADYIVESTGVFTDKDKAAAHLKVINDRFGIVEGLMTTVHSMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEDIKAAIKEESEGKLKGILGYTEDEVVSTDFAGIALNDHFVKLVTWYDNELGYSTRVIDLISHVASVN 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8696190 8702683 - Cp4.1LG09g09880.1 Cpe09g00978 475344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00978 575 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 482 499 IPR020831 GO:0016620
Cpe09g00978 575 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 425 441 IPR020831 GO:0016620
Cpe09g00978 575 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 522 537 IPR020831 GO:0016620
Cpe09g00978 575 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 115 - -
Cpe09g00978 575 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 414 IPR036291 -
Cpe09g00978 575 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 115 IPR036291 -
Cpe09g00978 575 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 113 267 IPR020829 GO:0016620
Cpe09g00978 575 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 412 542 IPR020829 GO:0016620
Cpe09g00978 575 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 414 575 IPR020831 GO:0016620
Cpe09g00978 575 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 309 414 IPR020831 GO:0016620
Cpe09g00978 575 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 115 IPR020831 GO:0016620
Cpe09g00978 575 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Cpe09g00978 575 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 310 406 IPR020828 GO:0051287
Cpe09g00978 575 Gene3D Dihydrodipicolinate Reductase; domain 2 407 556 - -
Cpe09g00978 575 Gene3D - 3 109 - -
Cpe09g00978 575 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 115 287 IPR020831 GO:0016620
Cpe09g00978 575 SMART gp_dh_n_7 4 125 IPR020828 GO:0051287
Cpe09g00978 575 SMART gp_dh_n_7 308 417 IPR020828 GO:0051287
Cpe09g00978 575 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 111 267 - -
Cpe09g00978 575 Gene3D Dihydrodipicolinate Reductase; domain 2 110 269 - -
Cpe09g00978 575 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 414 575 - -
Cpe09g00978 575 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 115 287 - -
Cpe09g00978 575 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 309 414 - -
Cpe09g00978 575 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 410 554 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00978 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101213074 516.924
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00978 Cpe20g00323 CCT
Cpe09g00978 Cpe20g00323 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00978 Cpe-Chr9:8696190 Cpe15g00903 Cpe-Chr15:8679143 3.63E-123 dispersed
Cpe01g02560 Cpe-Chr1:20864032 Cpe09g00978 Cpe-Chr9:8696190 2.30E-166 transposed
Cpe13g01114 Cpe-Chr13:8939555 Cpe09g00978 Cpe-Chr9:8696190 5.17E-167 transposed
Cpe20g00323 Cpe-Chr20:1817586 Cpe09g00978 Cpe-Chr9:8696190 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015008 0 0 0 0 0 1 2 1 1 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00978 Cpe_Chr09 FPKM 0.0 0.0 0.0 0.0 0.097256 0.0 0.134849 0.382681 0.324311 0.47439