Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00980 ATGGACGCTGTGGCCGTGTTTGGAAGAGGAGCTCTGCCGCTTATCCGGCCGCCGCCGACGACAACCGTTTGCTGCTTGACCCCTACCCGGACTGCCACCCTGAGCCGCCATCGCCGCCGCCACGACCATCTTTCAGCATTCCCTTCGAATTCTAATCTCTTTCCCCAACTTTCTATTCGTTCTCGTGCTGCTTCTACTAACAATGAATCCTTCATTTTCTTGCCTCATTTGGTTGCCTCCCTGGAACGAGTCGACCAGACCTACATTATGGTGAAACCTGACGGTGTTCAACGTGGCCTTGTTGGAGAGATAATTTCACGATTTGAGAAGAAAGGGTTTAAGCTTACTGGCTTGAAGCTCTTCCAATGCACCAAGGATTTGGCTGAGGAACACTACAAGGATCTTAAGGGCAAGTCTTTTTTTCCTGGTTTAATTGAATACATTACATCAGGTCCTGTTGTGTGTATGGCATGGGAGGGTGTTGGTGTTGTGGCATCAGCACGTAAGTTAATCGGAGTTACAAATCCTCTCGAAGCCGAGCCAGGAACAATTAGAGGGGATCTTTCTATTCAAAAAGGAAGGAATGTGATTCATGGGAGCGATAGTCCTGAGAGTGGCAAGCGTGAAGTAGCTCTCTGGTTCAAAGAAGGCGAAGTGGTCGAGTGGGAGCCAGCTCTTGCACCATGGCTGATAGAGTGA 699 49.36 MDAVAVFGRGALPLIRPPPTTTVCCLTPTRTATLSRHRRRHDHLSAFPSNSNLFPQLSIRSRAASTNNESFIFLPHLVASLERVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCTKDLAEEHYKDLKGKSFFPGLIEYITSGPVVCMAWEGVGVVASARKLIGVTNPLEAEPGTIRGDLSIQKGRNVIHGSDSPESGKREVALWFKEGEVVEWEPALAPWLIE 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8708853 8711286 + Cp4.1LG09g09720.1 Cpe09g00980 475346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00980 232 SUPERFAMILY Nucleoside diphosphate kinase, NDK 85 231 IPR036850 -
Cpe09g00980 232 Hamap Nucleoside diphosphate kinase [ndk]. 84 219 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cpe09g00980 232 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 36 231 - -
Cpe09g00980 232 CDD NDPk_I 86 214 - -
Cpe09g00980 232 Pfam Nucleoside diphosphate kinase 86 218 IPR034907 -
Cpe09g00980 232 ProSitePatterns Nucleoside diphosphate kinases active site. 195 203 IPR023005 -
Cpe09g00980 232 PRINTS Nucleoside diphosphate kinase signature 87 109 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cpe09g00980 232 PRINTS Nucleoside diphosphate kinase signature 131 150 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cpe09g00980 232 PRINTS Nucleoside diphosphate kinase signature 151 168 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cpe09g00980 232 PRINTS Nucleoside diphosphate kinase signature 172 188 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cpe09g00980 232 PRINTS Nucleoside diphosphate kinase signature 195 214 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cpe09g00980 232 Gene3D - 80 232 IPR036850 -
Cpe09g00980 232 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 36 231 - -
Cpe09g00980 232 SMART ndk_5 84 221 IPR034907 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00980 K00940 ndk, NME; nucleoside-diphosphate kinase [EC:2.7.4.6] - csv:101212831 382.104
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00980 Cpe20g00326 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00655 Cpe-Chr8:4469262 Cpe09g00980 Cpe-Chr9:8708853 3.28E-66 dispersed
Cpe09g00980 Cpe-Chr9:8708853 Cpe12g00575 Cpe-Chr12:5835026 8.09E-25 dispersed
Cpe20g00326 Cpe-Chr20:1834547 Cpe09g00980 Cpe-Chr9:8708853 4.02E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g915 . Blo16g00253 . . . Bpe13g00213 Bma06g00246 . Cmo13g00816 Cmo18g00193 . . . . . Cpe20g00326 . . . . . . . . . . . . . . . Cone2ag0956 Cone16ag0039 . . Lsi02g00476 Csa01g00935 Chy12g01193 Cme12g01615 . . Bda11g01612 . . . . . . . . Cma13g00784 Cma18g00217 Car13g00633 Car18g00211 Cpe09g00980 . . . . . . . . Cla03g00334 Cam03g0349 Cec03g0340 Cco03g0355 Clacu03g0350 Cmu03g0956 Cre03g0649 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008226 2 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g00980 Cpe_Chr09 FPKM 104.216171 116.091194 19.920242 20.667059 88.834946 84.95459 95.92276 12.103356 11.181452 14.024884