Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g00992 | ATGGCGCCGCCAACACTTTTTCTCTCTCTACTCTCTCTCTTCCTCCTTTCCTCTCTCTCCACCACCCTCTCCGCCGCTCCGGCCTCCGTACAGAACCCCGAACTCGTCGTTGAAGAAGTACACAGGAGCATAATCAACGCGACGAAACGGAGGAATTTGGGATATCTTTCATGTGGAACGGGAAATCCGATCGACGATTGCTGGCGGTGCGATTCAAATTGGGAGAAGAATCGCCAGAGATTAGCCGACTGTGGAATCGGATTCGGCAAAAACGCCATCGGCGGCCGTGACGGTAAAATCTACGTCGTCACCGATTCCGGCGACGACGATCCCGTTAACCCAAAACCGGGAACTCTCCGGTACGCCGTAATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGATATGGTAATCCGATTAAAAGAGGAACTAATCATGAACTCATTCAAAACCATCGACGGCCGTGGCGCCAGCGTCCACATCGCCGGCGGCCCCTGCATTACAATTCAATACGTAACGAACATCATAATCCATGGCTTGAACATTCACGATTGCAAGCAAGGAGGAAACACAGACGTGAGAGATTCCCCAAGACATTTTGGGTTCCGAACTATCTCCGACGGCGATGGCGTTTCAATCTTCGGCGGCAGCCATGTCTGGGTGGATCATTGCTCGTTGTCGAACTGTAAGGATGGGTTGATCGATGCGATTCATGGGTCGACGGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTAATGTTGCTTGGACACAGTGATTCGTATACTCAAGACAAGAATATGCAGGTCACCATAGCTTTTAACCACTTCGGTGAAGGGCTTGTTCAACGAATGCCCAGATGCCGACATGGGTATTTTCACGTGGTGAACAATGACTACACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCGACCATTAACAGTCAAGGCAACAGATTTGTGACAAAGTACGAGGATGCGCCGGAGAGTGAGTGGAAGCATTGGAATTGGAGGTCGGAAGGGGATATGATGGTGAACGGTGCGTTTTTCACGGCTTCCGGCGCCGGAGCGTCGTCGAGCTATGCTAGAGCGTCGAGCTTAGGTGCGAGGCCGTCGTCGCTGGTCGGGACAATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA | 1203 | 51.79 | MAPPTLFLSLLSLFLLSSLSTTLSAAPASVQNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVTKYEDAPESEWKHWNWRSEGDMMVNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC | 400 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8789668 | 8791706 | + | Cp4.1LG09g09910.1 | Cpe09g00992 | 475358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g00992 | 400 | Gene3D | - | 61 | 393 | IPR012334 | - | |
Cpe09g00992 | 400 | SUPERFAMILY | Pectin lyase-like | 37 | 395 | IPR011050 | - | |
Cpe09g00992 | 400 | PANTHER | PECTATE LYASE 18-RELATED | 25 | 397 | IPR045032 | GO:0030570 | |
Cpe09g00992 | 400 | SMART | amb_all | 136 | 333 | IPR002022 | - | |
Cpe09g00992 | 400 | PANTHER | PECTATE LYASE 22-RELATED | 25 | 397 | - | - | |
Cpe09g00992 | 400 | PRINTS | Pollen allergen Amb family signature | 208 | 229 | IPR018082 | - | |
Cpe09g00992 | 400 | PRINTS | Pollen allergen Amb family signature | 310 | 329 | IPR018082 | - | |
Cpe09g00992 | 400 | PRINTS | Pollen allergen Amb family signature | 84 | 101 | IPR018082 | - | |
Cpe09g00992 | 400 | PRINTS | Pollen allergen Amb family signature | 288 | 307 | IPR018082 | - | |
Cpe09g00992 | 400 | PRINTS | Pollen allergen Amb family signature | 144 | 160 | IPR018082 | - | |
Cpe09g00992 | 400 | PRINTS | Pollen allergen Amb family signature | 108 | 133 | IPR018082 | - | |
Cpe09g00992 | 400 | Pfam | Pectate lyase | 146 | 327 | IPR002022 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe09g00992 | Cpe20g00339 | CCT | |
Cpe09g00992 | Cpe20g00339 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01570 | Cpe-Chr3:12149997 | Cpe09g00992 | Cpe-Chr9:8789668 | 4.13E-130 | dispersed | |
Cpe09g00992 | Cpe-Chr9:8789668 | Cpe11g00043 | Cpe-Chr11:220647 | 0 | dispersed | |
Cpe01g02313 | Cpe-Chr1:19493905 | Cpe09g00992 | Cpe-Chr9:8789668 | 0 | wgd | |
Cpe20g00339 | Cpe-Chr20:1918062 | Cpe09g00992 | Cpe-Chr9:8789668 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g00992 | K01728 | - | csv:101209736 | 745.732 |