Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g00992 ATGGCGCCGCCAACACTTTTTCTCTCTCTACTCTCTCTCTTCCTCCTTTCCTCTCTCTCCACCACCCTCTCCGCCGCTCCGGCCTCCGTACAGAACCCCGAACTCGTCGTTGAAGAAGTACACAGGAGCATAATCAACGCGACGAAACGGAGGAATTTGGGATATCTTTCATGTGGAACGGGAAATCCGATCGACGATTGCTGGCGGTGCGATTCAAATTGGGAGAAGAATCGCCAGAGATTAGCCGACTGTGGAATCGGATTCGGCAAAAACGCCATCGGCGGCCGTGACGGTAAAATCTACGTCGTCACCGATTCCGGCGACGACGATCCCGTTAACCCAAAACCGGGAACTCTCCGGTACGCCGTAATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGATATGGTAATCCGATTAAAAGAGGAACTAATCATGAACTCATTCAAAACCATCGACGGCCGTGGCGCCAGCGTCCACATCGCCGGCGGCCCCTGCATTACAATTCAATACGTAACGAACATCATAATCCATGGCTTGAACATTCACGATTGCAAGCAAGGAGGAAACACAGACGTGAGAGATTCCCCAAGACATTTTGGGTTCCGAACTATCTCCGACGGCGATGGCGTTTCAATCTTCGGCGGCAGCCATGTCTGGGTGGATCATTGCTCGTTGTCGAACTGTAAGGATGGGTTGATCGATGCGATTCATGGGTCGACGGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTAATGTTGCTTGGACACAGTGATTCGTATACTCAAGACAAGAATATGCAGGTCACCATAGCTTTTAACCACTTCGGTGAAGGGCTTGTTCAACGAATGCCCAGATGCCGACATGGGTATTTTCACGTGGTGAACAATGACTACACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCGACCATTAACAGTCAAGGCAACAGATTTGTGACAAAGTACGAGGATGCGCCGGAGAGTGAGTGGAAGCATTGGAATTGGAGGTCGGAAGGGGATATGATGGTGAACGGTGCGTTTTTCACGGCTTCCGGCGCCGGAGCGTCGTCGAGCTATGCTAGAGCGTCGAGCTTAGGTGCGAGGCCGTCGTCGCTGGTCGGGACAATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1203 51.79 MAPPTLFLSLLSLFLLSSLSTTLSAAPASVQNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVTKYEDAPESEWKHWNWRSEGDMMVNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8789668 8791706 + Cp4.1LG09g09910.1 Cpe09g00992 475358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g00992 400 Gene3D - 61 393 IPR012334 -
Cpe09g00992 400 SUPERFAMILY Pectin lyase-like 37 395 IPR011050 -
Cpe09g00992 400 PANTHER PECTATE LYASE 18-RELATED 25 397 IPR045032 GO:0030570
Cpe09g00992 400 SMART amb_all 136 333 IPR002022 -
Cpe09g00992 400 PANTHER PECTATE LYASE 22-RELATED 25 397 - -
Cpe09g00992 400 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Cpe09g00992 400 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cpe09g00992 400 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Cpe09g00992 400 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Cpe09g00992 400 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Cpe09g00992 400 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Cpe09g00992 400 Pfam Pectate lyase 146 327 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00992 Cpe20g00339 CCT
Cpe09g00992 Cpe20g00339 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01570 Cpe-Chr3:12149997 Cpe09g00992 Cpe-Chr9:8789668 4.13E-130 dispersed
Cpe09g00992 Cpe-Chr9:8789668 Cpe11g00043 Cpe-Chr11:220647 0 dispersed
Cpe01g02313 Cpe-Chr1:19493905 Cpe09g00992 Cpe-Chr9:8789668 0 wgd
Cpe20g00339 Cpe-Chr20:1918062 Cpe09g00992 Cpe-Chr9:8789668 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g00992 K01728 - csv:101209736 745.732