Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01005 ATGAGGCTGTATGTGTATGTATTGGAGGCTAAGAATCTCCTTGTGAAGGACTCGTTTGTGAAGCTACGGGTTGGGAGGCGTAAGGCTAAGACGAGGATTATGAGGAACTGTTCTAATCCTGTTTGGAATGAGGAGTTCATTTTTAAGTTTCGTGATGTGGATGAGGAACTGGTTGTTTCTGTTTATGAGCATAGTGATGAGTCCAGATTCTTCCATGGTTCATCGGGGTTGATTGGTCGGGTTCGGATTCCGATATGGATGGTTGCTGATGAGGATTCACAGACCCTGCCGCCCACTTGGTTTGATGTGCGAAGGTCTGGAACTGAGAAGTTCATCAATGAAGTTGCTGGGAAAGTGCTTCTTATTGTCTCATTACATGGGAAAGTCAATGTACTTAATCAATCAAGTGTTACTAATGCTAAACAATTGGAAGACTCGTCTGCCATTTCACAGGATTTGGTCGGCTCGAAATCTTCGTCCAGCAAGTCTATCAAAGGGAAGTTTAACAAGAAGAGCATCGTGACTCGATTGGAGAGACTGTTCCATAAGAGCGATGAGGATACAAGAACAGATAATTCTTCGGAGTTATCAAGTGCCATGTCTGATAACGAAGAGCGCATAGATGAACATCCCTCGGAATGTAGCTTTGATGAAGCCATCGAGACGCTGCAGTCGAGGAGAAGTGAACAGGAAATGCCAGAGAATCTACCGGGCGGCGTTCTTGTCGATCAAGTGTATGTAGGTTCACCTGGTGATTTGAACAAACTTCTGTTTGCTCCAGATTCCAAGTTCAGGAGAGAACTAGCAGAACTTCAGGGAACAACAAATTTAGAAGAAGGAAACTGGTCTTGGAAGCAAGGGGACGTACCGTGTCTATCACGGATCGTTTCTTATCGAAAAGCTGCAACGAAGGTCGTTGGAGCTATTAATGCTACCGAGGAGCAAACCTACATCAAAGGGGACGGATGGGAATTCGCTGTCTTCGTAAACGTAAGTACACCTGAAGTTCCATTTGGTAATGCCTTCAATGTTGAGTTACTTTACAAGATAATGCCTGGTCCTGAGTTAACCTCTGGAGAAGAGACGTCCCATTTGGTAGTCACTTGGGGCATAAACTTCCTCCATAGTACAATGATGAAAGGGATGATTGAAAAAGGCGTTCGACAGGGTATGGAGGAAAGTTTTGTTCAATTTACGAACGTGCTGGCACAGCATTTAAAAGTACCGAATTCAGCCGAGTTACCGAACAAGGATCTTGTGTTGTCGAGTTCTGAAAGTGACCGCCAATCGGATTTTGAATTGGCCCGAAAATACTTCTGGAACTTCACTGTAGTTTCTACCGTTTTCGTGCTGCTGTACATACTTGCGCATATTACGCTTTCTAAGTCCAAAACGATGCAAGGCTTGGAGTTCACTGGATTGGATTTGCCAGATAGTTTAGGAGAACTTGTTACTGGTGGGATTTTAGTTCTTCAATTGGAACGTGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGCTAAAAAGAGAAGGTGACCATGGTGTCAAAGGCCAAGGAAATGGATGGATACTAACCGTGGCTCTTATCGAAGGGGTGAACATTTCGTCCTTGGATTCTTCGGGTTCCTCGGACCCGTGTGTGGTTTTCACATGCAATGGTGAAAAAAGAACGAGCTCCGTTGAGCTTCAAACTCATGAGCCTCAATGGAATGAGATACTCGAGTTTGATGCTATGAAGGAACCGCCATCAGTATTATATGTGGAGGTTTTCGACTTCGATGGTCCACTCGACCAGGCTACCTCGCTCGGACACGCAGAGATCAATTTCCTAAAATATAAATCAACTGAACTTGCAGATTTATGGGTTCCTCTTGAGGGGAAGCTTGCTCAGTCTTCTCAATCAAAGCTGCATTTGAGAATCTTCTTAGATAATACCGATGGAGTCGAAACGATGAGACAGTACTTGTCTATGAAGGGAAAGGAGGTCGGGAAGAAGTTGCTTCAATGGTGGACTTTGGCTAACTTCTTTCTTGGGTGTGCTTTATTAGCTCCATCCAAGGTCGCCTTACAGGAACTCGACGTTTCAGAAACTTTTCGGGTTGCCAGCCGAAGAGTTTCTCGTCAGCGACTTCACTTGCTCCCTGAGAAGAAAAATGCTTCTCCAGGTACTATCACTGTTGCTATGAAAGGAAGACTATTTCTATCTGCCAGAATCATTGGGTTTTATGCCAATATTTTTGGACAGAAAACAAAATTTTTCTTTCTTTGGGAGGACATTGAAGATATTCGAGTACTTCACCCATCCCTCGCCTCTCTGGGTAGCCCGTCATTGGTCATAATTCTTAAAAAAGGTCGAGGTCTCGAAGCAAGTCACGGTGCTAAGATCCAAGATGAACAAGGAAGACTCAGGTTTTACCTCCAATCATTTGTTTCATTCAATGTAGCCAGCAGGACGATTATGGGGATGTGGAGAACAAGAACGTCGACCCTCGATCAGAAAGTACAAGCTGCTGGAACGCCGAATGATTAG 2532 44.19 MRLYVYVLEAKNLLVKDSFVKLRVGRRKAKTRIMRNCSNPVWNEEFIFKFRDVDEELVVSVYEHSDESRFFHGSSGLIGRVRIPIWMVADEDSQTLPPTWFDVRRSGTEKFINEVAGKVLLIVSLHGKVNVLNQSSVTNAKQLEDSSAISQDLVGSKSSSSKSIKGKFNKKSIVTRLERLFHKSDEDTRTDNSSELSSAMSDNEERIDEHPSECSFDEAIETLQSRRSEQEMPENLPGGVLVDQVYVGSPGDLNKLLFAPDSKFRRELAELQGTTNLEEGNWSWKQGDVPCLSRIVSYRKAATKVVGAINATEEQTYIKGDGWEFAVFVNVSTPEVPFGNAFNVELLYKIMPGPELTSGEETSHLVVTWGINFLHSTMMKGMIEKGVRQGMEESFVQFTNVLAQHLKVPNSAELPNKDLVLSSSESDRQSDFELARKYFWNFTVVSTVFVLLYILAHITLSKSKTMQGLEFTGLDLPDSLGELVTGGILVLQLERVYNMVSHFIQARLKREGDHGVKGQGNGWILTVALIEGVNISSLDSSGSSDPCVVFTCNGEKRTSSVELQTHEPQWNEILEFDAMKEPPSVLYVEVFDFDGPLDQATSLGHAEINFLKYKSTELADLWVPLEGKLAQSSQSKLHLRIFLDNTDGVETMRQYLSMKGKEVGKKLLQWWTLANFFLGCALLAPSKVALQELDVSETFRVASRRVSRQRLHLLPEKKNASPGTITVAMKGRLFLSARIIGFYANIFGQKTKFFFLWEDIEDIRVLHPSLASLGSPSLVIILKKGRGLEASHGAKIQDEQGRLRFYLQSFVSFNVASRTIMGMWRTRTSTLDQKVQAAGTPND 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8897627 8903785 - Cp4.1LG09g10120.1 Cpe09g01005 475371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01005 843 ProSiteProfiles C2 domain profile. 510 623 IPR000008 -
Cpe09g01005 843 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 131 IPR035892 -
Cpe09g01005 843 CDD C2 525 625 - -
Cpe09g01005 843 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 1 838 - -
Cpe09g01005 843 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Cpe09g01005 843 Gene3D C2 domain 509 643 IPR035892 -
Cpe09g01005 843 Gene3D C2 domain 1 126 IPR035892 -
Cpe09g01005 843 Pfam VAD1 Analog of StAR-related lipid transfer domain 241 390 IPR031968 -
Cpe09g01005 843 Pfam C2 domain 523 625 IPR000008 -
Cpe09g01005 843 Pfam C2 domain 2 102 IPR000008 -
Cpe09g01005 843 ProSiteProfiles VASt domain profile. 237 410 IPR031968 -
Cpe09g01005 843 PANTHER BNAA05G37250D PROTEIN 1 838 IPR044511 -
Cpe09g01005 843 MobiDBLite consensus disorder prediction 184 215 - -
Cpe09g01005 843 CDD C2 3 102 - -
Cpe09g01005 843 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 523 649 IPR035892 -
Cpe09g01005 843 Gene3D - 717 826 IPR011993 -
Cpe09g01005 843 SMART C2_3c 2 97 IPR000008 -
Cpe09g01005 843 SMART C2_3c 524 622 IPR000008 -
Cpe09g01005 843 MobiDBLite consensus disorder prediction 201 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01005 - - - cmax:111490252 1479.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01005 Cpe-Chr9:8897627 Cpe18g00761 Cpe-Chr18:7295754 2.35E-10 dispersed
Cpe09g01005 Cpe-Chr9:8897627 Cpe20g00665 Cpe-Chr20:4373327 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01005 Cpe_Chr09 FPKM 3.378011 3.733482 6.269421 5.43002 5.166006 3.512995 4.756253 11.096319 8.440922 9.365687