Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01010 ATGAGTATCAAAATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTTCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTTGAGGAATTTGGAAGGAATTTGGAGGAATTAGGCTCCATGTGA 381 41.21 MSIKMGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPEFGRNLKEFGGIWKEFEGIWRNFEEFGRNLEELGSM 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8933543 8934946 + Cp4.1LG09g10070.1 Cpe09g01010 475376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01010 126 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 13 93 - -
Cpe09g01010 126 Pfam Lateral organ boundaries (LOB) domain 19 93 IPR004883 -
Cpe09g01010 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 93 - -
Cpe09g01010 126 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01010 - - - zju:107418298 152.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01574 Cpe09g01010 CCT
Cpe09g01010 Cpe20g00259 CCT
Cpe09g01010 Cpe20g00259 ECH
Cpe04g01574 Cpe09g01010 ECH
Cpe09g01010 Cpe18g00859 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01010 Cpe-Chr9:8933543 Cpe11g00664 Cpe-Chr11:4450407 5.45E-40 dispersed
Cpe01g02332 Cpe-Chr1:19603996 Cpe09g01010 Cpe-Chr9:8933543 9.02E-42 wgd
Cpe18g00859 Cpe-Chr18:7908787 Cpe09g01010 Cpe-Chr9:8933543 1.01E-45 wgd
Cpe20g00259 Cpe-Chr20:1458285 Cpe09g01010 Cpe-Chr9:8933543 1.54E-52 wgd
Cpe04g00534 Cpe-Chr4:5794118 Cpe09g01010 Cpe-Chr9:8933543 2.09E-43 wgd
Cpe04g01574 Cpe-Chr4:12321467 Cpe09g01010 Cpe-Chr9:8933543 4.85E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013013 0 1 0 0 0 1 2 0 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50038 PF03195 LOB 1.70E-31 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01010 Cpe_Chr09 FPKM 5.019157 9.721288 4.173233 5.24312 5.829367 9.621276 6.146066 6.302222 6.268413 5.4851