Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01018 ATGGGGTCGTGGTTCAGCTCAAACAAATTCAGTAAAGAAGAGCAGAATCAGTCGCTTAACGAGGCCAAGAAGATAATCTCCTCTAATCCCGTTGTTGTTTTCAGCAAGACTTACTGTGGGTATTGCTCGAGAGTCAAGGAGTTGCTCACACAGCTTGGAGCTAGTCATAAGGTCATTGAATTGGACCAAAAAAGTGATGGAGATGCAATTCAATCAGCTTTAGCAGAGTGGACGGGTCAAACCTCGGTGCCTAACGTGTTTATCGGAGGAAAACACATCGGTGGTTGCGATGCGGTTACAAATAAGCACAGCAGTGGTCAGCTGATGCCACTTCTTGCTGCTGCTGGTGCCATCGCCAATGACTCTGCTCAGCTATGA 378 47.09 MGSWFSSNKFSKEEQNQSLNEAKKIISSNPVVVFSKTYCGYCSRVKELLTQLGASHKVIELDQKSDGDAIQSALAEWTGQTSVPNVFIGGKHIGGCDAVTNKHSSGQLMPLLAAAGAIANDSAQL 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8994341 8996163 + Cp4.1LG09g10220.1 Cpe09g01018 475384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01018 125 Pfam Glutaredoxin 31 93 IPR002109 -
Cpe09g01018 125 PRINTS Glutaredoxin signature 31 49 IPR014025 -
Cpe09g01018 125 PRINTS Glutaredoxin signature 76 89 IPR014025 -
Cpe09g01018 125 PRINTS Glutaredoxin signature 90 103 IPR014025 -
Cpe09g01018 125 TIGRFAM GRX_euk: glutaredoxin 31 111 IPR011899 -
Cpe09g01018 125 PANTHER GLUTAREDOXIN 2 2 125 - -
Cpe09g01018 125 ProSiteProfiles Glutaredoxin domain profile. 19 119 - -
Cpe09g01018 125 SUPERFAMILY Thioredoxin-like 20 117 IPR036249 -
Cpe09g01018 125 PANTHER GLUTAREDOXIN-C1 2 125 - -
Cpe09g01018 125 Gene3D Glutaredoxin 10 125 - -
Cpe09g01018 125 CDD GRX_GRXh_1_2_like 30 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01018 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101205064 209.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01018 Cpe-Chr9:8994341 Cpe18g00653 Cpe-Chr18:6649688 1.01E-25 dispersed
Cpe19g01015 Cpe-Chr19:7082312 Cpe09g01018 Cpe-Chr9:8994341 9.66E-07 dispersed
Cpe12g01161 Cpe-Chr12:9526133 Cpe09g01018 Cpe-Chr9:8994341 1.85E-28 transposed
Cpe19g00839 Cpe-Chr19:6232634 Cpe09g01018 Cpe-Chr9:8994341 1.80E-24 transposed
Cpe13g00891 Cpe-Chr13:7651265 Cpe09g01018 Cpe-Chr9:8994341 9.46E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00382 Csa01g00862 . Cme12g01684 . . . Bda14g00807 . Bpe15g00641 Bma03g00778 . Sed01g1640 . . . . . Car18g00168 Cpe09g01018 . Bhi08g01625 Tan05g1994 Cmetu12g1182 Lac10g0460 Hepe07g2217 . . Cla01g01309 Cam01g1421 Cec01g1455 Cco01g1469 Clacu01g1374 Cmu01g1282 Cre01g1257 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003081 2 2 1 3 2 1 2 1 0 1 2 1 1 2 2 1 1 2 2 1 2 2 2 2 2 2 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01018 Cpe_Chr09 FPKM 4.490432 3.388794 28.067474 27.091572 6.746403 5.939613 8.042861 61.860512 58.009762 65.873428