Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01019 ATGTCCACAACAACTCTAGTCATTCCGCTCTTCCTCTATCTCGTCCTCTCGTCTTTTCTCCTATCCATTTCCACCGCCAACATCCACTCCAACAGTTGCCGATCCTTCTGCGGCAACATCACAATCGACTATCCCTTCGCTCTCCAGTACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTCTACTGCATGAACGACGTTTTAATGTTCCACATCCGATCCGGATCCTACAGAGTCCTAGACATCGATTACGCTTACGAAGCCCTAACTCTCCACGACCCTCACATGTCGACCTGCGACACAATCGTCCTCGGCCGCCGCGGCAACGGCTTCGACATCGAGGAATGGCGTTCGCCGTACCTGAATCCGACGGCCGATAACGCCTTCCTCCTCATCGGTTGCTCCGCCCAATCGCCACTCTTCCAAGGGTTCCCGAACAAGCACCTAGTCTGTAGAAACGTTTCCGGACTGGGCTGTGAGGAGTATTATGACTGTCCGGCTTGGGGTATATTGGGCCACAGACGACCGGGCCGAAATTATGGGCCCGGCCCACCAGAGTGCTGTGCGGTTCCTTTTGGGTCCATTAAGGCCATAAATCTCACTAAGCTTCAGTGTGAAGGCTATAGCAGTGCTTATAATCTGGCCCCGTTGAGGCTTAATGGGCCTGATCAATGGGCCTATGGGATACGTGTGAAATATTCGGTCCAAGCAAACGAAGACTTTTGCCGCGCGTGCCAAGCCACTGGCGGCACGTGTGGATTTGGTACGGATGGTGTTAGACAGCTGTGCATGTGTGGTAGTTCGAATTCTTCCTCCACTTGTGATTTTGGTAAGGCAGGGGCAATTTCTTATGACCTCATTATCGACAAGGATGACATCATGGACACTAATCAAAGCTATATTAGCAGGAAGCTTGATGGTGATGTTTAG 930 52.26 MSTTTLVIPLFLYLVLSSFLLSISTANIHSNSCRSFCGNITIDYPFALQYGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYEALTLHDPHMSTCDTIVLGRRGNGFDIEEWRSPYLNPTADNAFLLIGCSAQSPLFQGFPNKHLVCRNVSGLGCEEYYDCPAWGILGHRRPGRNYGPGPPECCAVPFGSIKAINLTKLQCEGYSSAYNLAPLRLNGPDQWAYGIRVKYSVQANEDFCRACQATGGTCGFGTDGVRQLCMCGSSNSSSTCDFGKAGAISYDLIIDKDDIMDTNQSYISRKLDGDV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8995832 8998062 - Cp4.1LG09g10280.1 Cpe09g01019 475385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01019 309 Pfam Wall-associated receptor kinase galacturonan-binding 33 93 IPR025287 GO:0030247
Cpe09g01019 309 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 13 280 - -
Cpe09g01019 309 PANTHER WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN 13 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01019 - - - cpep:111802420 578.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01019 Cpe-Chr9:8995832 Cpe11g00761 Cpe-Chr11:6097431 2.35E-21 dispersed
Cpe03g01310 Cpe-Chr3:10609571 Cpe09g01019 Cpe-Chr9:8995832 1.83E-39 transposed
Cpe20g00348 Cpe-Chr20:1967796 Cpe09g01019 Cpe-Chr9:8995832 2.77E-25 wgd
Cpe20g00249 Cpe-Chr20:1408479 Cpe09g01019 Cpe-Chr9:8995832 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g769 . . . Bda15g00552 . . . . Cmo13g00911 Cmo18g00135 . . . . . . . . . . . . . . . . . . . . . Cone2ag0914 Cone16ag0094 . . . Csa01g00860 Chy12g01261 Cme12g01686 . . . . . . . Bma08g00097 Sed08g2520 . . Cma13g00880 Cma18g00177 Car13g00721 Car18g00167 Cpe09g01019 . Bhi08g01623 Tan05g1996 Cmetu12g1069 Lac10g0458 Hepe07g2219 . . Cla01g01307 Cam01g1423 Cec01g1457 Cco01g1466 Clacu01g1372 Cmu01g1280 Cre01g1259 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011599 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01019 Cpe_Chr09 FPKM 24.991463 24.673582 21.18251 22.233553 34.345936 36.115513 35.379082 20.081936 19.635351 20.083174