Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01025 ATGGCTAGTCCTGTGGATAACCTACACCCTGATATTCGTCGTATAAAGGGAGATGGTCAGCAAGCTGAGGATAAAAACCAGCATGTTGAGAAAGAGGGCGGCCTGAGTGGTGGTGAGAGGGACATGGCTCCGGTTACTGGCAATTCCATCCATAGGTCTGGTTCTCGCCCACAGCTAGACCTCAGTAAAGCTGCAATTCAGGGCAATTTCGAGGAGAGAGACCCTACAATTCTTCTGCCTAACCAATCTGATGATATATCTCACCTGGCTCTTGATATCGGCGGATCTCTCATCAAATTGGTTTACTTTTCAAGGCATGAAGATCAATCGGTTGATGATAAGAGGAAGAGGAGCATGAGGAAGAGGCTGGGGTTTTCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTGAAGTTTGAGACATGCAAGATTAACGAGTGCTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTAGCAACAATTTACCTCGTTGGCATTCAGATGGCTCAACAAATGAAAATGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGACCTTTTTAAAGAAAGACTTGGAGTTAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTCGCTGGAGCAAATTTTCTGCTAAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTCGTGCAACTTGACCATAATGAATTATTTCCCTATCTGCTTGTTAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGCGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGTACCTACTGGGGTTTAGGAAGGCTGTTAACAAAATGTAATAGCTTTGATGAGTTGTTAGAGCTTACTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCTAAGATTGGTCTTTCTGCGTCAACAATTGCATCAAGTTTTGGCAAGACCATCTCAGAGAGCAAGGAGCTTGAGGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAATATTGGTCAGATATCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATCTTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCCTTTGCGGTCCACTTTTGGTCAAAAGGAGAAGCACAAGCAATGTTTTTGCGTCATGAAGGGTTCTTGGGTGCATTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTCGATTATCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCTATGGGTGCACCATATACAGGAGGGAGAGTTCATGGGCCTCCACTTGGTGATTTGAATGAAAAGATTTCTTGGATGGAGAAATTTGTGCAGAAGGGAACTGAAATAACTGCGCCTGTTCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGGGACCCTGCGATCTGATGCAAGTGCCCTAAACGTTGGTGTTCTCCATCTAGTACCCAATTTGGAGGTGTTCCCTCTGTTGGCTGATCCAAAAACATATGAACCTAACACTATTGATCTCTCTGATCACCGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGATCATTTACCAGATCTTGCTGTTGCAAGCGAAGGTGGAACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCGGCCCACTTGAGGAGGTTGATGGAGGAACCTACAGCATATGGAAAATTGGGTTTGGCTAATCTACTGGAACTGAGGGAAGAGTGCTTGAGGGAGTTCCAATTTTTTGATGCCTATAGAAGCATAAAACAGAGGGAGAATGAGGCATCACTTGCTGTTTTACCTGACCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTTCTGACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCCTGTGTCGATCTCTATCACAAGGGGACAATAATCGAGATTTACAAAATGAGTCGCAATAAGATGCAGAGGCCGTGGCGGGTCGATGATTTTGATGCCTTCAGAGAAAGAATGTTAGGATCTGGGGATAAGAAACCCATTCCTCATAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCCTGGCGAGGGAACTCCTCCGACGTGGAACTGAAGTTGTTTTAGTTGGAAACTCCCTTCCTGCCATAAATGATGTAACCGCAATGGAGCTTCCTGATATAGTAGTTGAGGCTGCCAAGCACTGTGACATACTACGTAGAGCTGCCGAAGCGGGCGGATTGATTGTGGATGCCATGGTTAACTCTGCGGATGGTTCTAAAGAGCGTTCATCATCTGTTCCCTTGATGGTTGTCGAAAATGGCTGTGGTAGTCCATGTATAGATCTAAGGCAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGATGCTGATTTGGTTATCTTGGAAGGAATGGGGAGGGCCCTTCATACCAACTTAAACGCCCAATTTAAATGTGATGCTTTAAAGCTTGCCATGGTGAAAAATCAAAGGCTAGCAGAAAAATTGTTCAATGGAAAGATATATGACTGTGTGTGCAAATACGAGCCATCACACTGA 2727 44.37 MASPVDNLHPDIRRIKGDGQQAEDKNQHVEKEGGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAAIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMRKRLGFSNGNRRSYPVLGGRLHFVKFETCKINECLDFIHSKQLHRGASNNLPRWHSDGSTNENAIIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELTQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISESKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDYLLAHQLVERFPMGAPYTGGRVHGPPLGDLNEKISWMEKFVQKGTEITAPVPMAPPGTTGLGGFEVPLSKGGTLRSDASALNVGVLHLVPNLEVFPLLADPKTYEPNTIDLSDHRELEYWFTVLSDHLPDLAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYKMSRNKMQRPWRVDDFDAFRERMLGSGDKKPIPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVGNSLPAINDVTAMELPDIVVEAAKHCDILRRAAEAGGLIVDAMVNSADGSKERSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNLNAQFKCDALKLAMVKNQRLAEKLFNGKIYDCVCKYEPSH 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9022976 9034320 + Cp4.1LG09g10200.1 Cpe09g01025 475391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01025 908 SUPERFAMILY Actin-like ATPase domain 202 435 IPR043129 -
Cpe09g01025 908 SUPERFAMILY AF1104-like 527 906 IPR036075 -
Cpe09g01025 908 Pfam Damage-control phosphatase ARMT1-like domain 616 894 IPR002791 -
Cpe09g01025 908 Coils Coil 12 32 - -
Cpe09g01025 908 MobiDBLite consensus disorder prediction 1 60 - -
Cpe09g01025 908 Gene3D - 315 424 - -
Cpe09g01025 908 SUPERFAMILY Actin-like ATPase domain 86 230 IPR043129 -
Cpe09g01025 908 Gene3D - 548 629 IPR035073 -
Cpe09g01025 908 Gene3D - 80 243 - -
Cpe09g01025 908 PANTHER PANTOTHENATE KINASE 36 830 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cpe09g01025 908 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 709 906 - -
Cpe09g01025 908 PANTHER PANTOTHENATE KINASE 2 36 830 - -
Cpe09g01025 908 TIGRFAM panK_eukar: pantothenate kinase 88 434 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cpe09g01025 908 PIRSF PanK_long 42 908 IPR015844 GO:0004594|GO:0015937
Cpe09g01025 908 MobiDBLite consensus disorder prediction 9 37 - -
Cpe09g01025 908 Pfam Fumble 88 433 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01025 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - csv:101203117 1659.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00506 Cpe-Chr9:3360173 Cpe09g01025 Cpe-Chr9:9022976 9.13E-152 dispersed
Cpe09g01025 Cpe-Chr9:9022976 Cpe15g00651 Cpe-Chr15:7208912 6.38E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01025 Cpe_Chr09 FPKM 12.044387 13.798399 15.11732 15.924827 3.331991 4.00639 3.265082 40.409122 39.942562 44.779644