Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe09g01032 | ATGGCGATTCGAGGGATCGATTTCAAATGGTACGATGGATTCTTCTTGTCAATGCTTGCTACTAGCATAATAATTGTGACTATCAATTGGAGGCGGTACAATACATGTAGATATCCGTTGCACGTATGGATCGTGGTTGATTATACCTCTGTGTTTGTTTTTCGCCTTTTGCTGTTCATAGATAATGCACTCTCAGCTGGAATGGGATTGGATTTTGGATGGCACCAACAATATGCTCAGTTTTGTGGAAGAGTTATGGTTCTTTCTATTCTCTCTATATTCCTCTACCCGTTTTTATGTGCGTGGACTGTAATCGGTACCCTATGGTTTCGAGACGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTTCTTTGCATTGCTTGCATGTCAGTGGGAAAGTGGTTAGCGCGTCGACAAGCACACTTGTTACGTGCCCAACAAGGCGTCCCCGTGTCTGAATATGGGGTACTTGTTGATATGATTCGGGTTCCTGATTGGGCGTTTGAAGCTGCAGGACTTGAAATACGAGGCGTTGGTCAAGATGCTATGGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGCGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCGAAGTTCGGGCTGAAGGCGGTCCCGACGGATTGCAGTGAATGCCCGATTTGCCTCGAAGAGTTCCATGTAGGGAATGAGGTTCGAGGTATGCCGTGTGCTCACAACTTCCATGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGGTGCCGCTCCTCCGTCTTCCCAAATCTCGACCTCAATGCTCTTTCTAACCTGCACTTGGACACAGAACAAACATCTGCCAATCGACCTTCAGCCACTCATTTCGACAGCGTCGAGAACGGTAGCTCGCCCGTGCCATCTGCTTCTCGACATTGA | 975 | 48.31 | MAIRGIDFKWYDGFFLSMLATSIIIVTINWRRYNTCRYPLHVWIVVDYTSVFVFRLLLFIDNALSAGMGLDFGWHQQYAQFCGRVMVLSILSIFLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLLRAQQGVPVSEYGVLVDMIRVPDWAFEAAGLEIRGVGQDAMGYHPGLFLTSAQREAVEALIQELPKFGLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLNALSNLHLDTEQTSANRPSATHFDSVENGSSPVPSASRH | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 9074155 | 9079026 | - | Cp4.1LG09g10390.1 | Cpe09g01032 | 475398 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe09g01032 | 324 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
| Cpe09g01032 | 324 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - | |
| Cpe09g01032 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
| Cpe09g01032 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
| Cpe09g01032 | 324 | SUPERFAMILY | RING/U-box | 219 | 285 | - | - | |
| Cpe09g01032 | 324 | MobiDBLite | consensus disorder prediction | 298 | 324 | - | - | |
| Cpe09g01032 | 324 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 307 | - | - | |
| Cpe09g01032 | 324 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 307 | IPR044793 | GO:0004842|GO:0010182 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe09g01032 | Cpe20g00235 | CCT | |
| Cpe09g01032 | Cpe18g00841 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe09g01032 | Cpe-Chr9:9074155 | Cpe03g00422 | Cpe-Chr3:2365187 | 1.81E-12 | dispersed | |
| Cpe18g00841 | Cpe-Chr18:7755223 | Cpe09g01032 | Cpe-Chr9:9074155 | 4.48E-153 | wgd | |
| Cpe20g00235 | Cpe-Chr20:1342753 | Cpe09g01032 | Cpe-Chr9:9074155 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe09g01032 | K16284 | - | csv:101222360 | 612.838 |