Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01045 ATGGTCGGCCATGGCAATCACAGGTTGAAATTCTCCATCTTCCATCACCAATCTTCTTCAACCTCCAAACCCGACCGCCCCATTCAGTATCCTCCAGAGTACCTCTGTGGAATTTCCAGGTCATTAATGGCGGACCCAGTCGTCGTCTCCTCCGGTCAGACCTACGAGCGCCTCTCCGTTCGCGTTTGTCAAGATTTCGGATTCTCCCCGACGGATGACGACGGCTCAACGGCGGATTTCTCCTCTGTTATCACCAACAGAAACATGAAACTCACGATTCTTAAATGGTGCGATAACAACGGAATCGAACACCCACAGCCGCCGGATTACACCTCGATTGAGTTAATCGTTCGTCAGTTAATGGAGAAGCAAAGGCAGAATAATCGATTCCTGGCTTCTGATACCGAGTTGTTAAGAGTCGTCGCCGATAAACGCCCCGGAGTTGCTGTTCATGCGGCGACGGAGGTTGGCCTCCGAGTCAATCGATTTCAACTGAACTCACCGCCGCAGACGGAGGAGATCGTACGTGAAAGTACTATTTTGCCCTTCAAAACGCAACCGTCTTGTTATGCTCCTCCGCCGCAGACGGAGGAGATCGGACATGAAAGCTTTGACAGAGAAGGGAATTCAAAGGAGGAAGCTCAAATCATCTCGAAATTCAGAAGCGATAACGAATTCGAGCAACAAGAAGGAGTGATTTCCCTAAGAAATTTAACGAAATCGGACGAATCGATTAGGGCTTCGTTATGCACGAAGGAATTACTCGCCGCCTTACTTCCTCTGGTTTCATCTCGATCCATGAACATCCAAATCAACGCCGTAGCTTCCGTCGTGAATCTCTCAATCGAGAAATCGAACAAAATGAAGATCGTACGATCCGGATTTGTTCCGCCATTAATCGATGTTTTAGATCGCGGATCCGCCGAATCGCAAGAACACGCCGCCGGTTCTCTGTTCAGTTTATCCTTAGACGACGAGAATAAAATGGCGATTGGAATCCTCGGCGGCTTACCGGTGTTGATGAACGCGCTCCGATCTGAGAACGAGAGGACGAGGAACGATTCAGCGCTTTGTTTATACCATTTGACATTGAATCCAAGCAACCGAGTCAAATTAGTGAAAATCGGCGCCGTTGGAATTCTGCTATCCTTGACGAGAATTGAAGGCTTTGCAAGTCGAATATTGCTGATTCTGTGCAATATCGCCGCCTGTGTCGACGGAAGATCGGCGATGTTGGATGCGAATGCGGTGGATTGTTTGGTCGGGATGTTGAAGGAGAAGGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCACTTCATGCTCTGAGTCAAGGCGGATTCCGATTCAGAGGATTGGCGACGGCGGCCGGCGCGGTGGAAGCTCTGAGAGAGGTTGAAGAAAGGGGAAGTGAACGGGCGAGGGAGAAGGCTAAGAGAATCTTGCAGATGATGAGAACTGGCGGGAATGGTTCGGTTCAGATGGATGGGGTTGATTCTGGTGGAGTCAGCTGGACCGGCCGGGTTGGTGTTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1578 49.94 MVGHGNHRLKFSIFHHQSSSTSKPDRPIQYPPEYLCGISRSLMADPVVVSSGQTYERLSVRVCQDFGFSPTDDDGSTADFSSVITNRNMKLTILKWCDNNGIEHPQPPDYTSIELIVRQLMEKQRQNNRFLASDTELLRVVADKRPGVAVHAATEVGLRVNRFQLNSPPQTEEIVRESTILPFKTQPSCYAPPPQTEEIGHESFDREGNSKEEAQIISKFRSDNEFEQQEGVISLRNLTKSDESIRASLCTKELLAALLPLVSSRSMNIQINAVASVVNLSIEKSNKMKIVRSGFVPPLIDVLDRGSAESQEHAAGSLFSLSLDDENKMAIGILGGLPVLMNALRSENERTRNDSALCLYHLTLNPSNRVKLVKIGAVGILLSLTRIEGFASRILLILCNIAACVDGRSAMLDANAVDCLVGMLKEKEMDSESTRENCVVALHALSQGGFRFRGLATAAGAVEALREVEERGSERAREKAKRILQMMRTGGNGSVQMDGVDSGGVSWTGRVGVGLNRYSTNTTKF 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9139986 9141563 - Cp4.1LG09g10340.1 Cpe09g01045 475411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01045 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 102 IPR013083 -
Cpe09g01045 525 Pfam U-box domain 31 100 IPR003613 GO:0004842|GO:0016567
Cpe09g01045 525 Gene3D - 205 388 IPR011989 -
Cpe09g01045 525 PANTHER U BOX DOMAIN-CONTAINING 1 499 - -
Cpe09g01045 525 SUPERFAMILY ARM repeat 217 487 IPR016024 -
Cpe09g01045 525 CDD RING-Ubox 35 70 - -
Cpe09g01045 525 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Cpe09g01045 525 Pfam Armadillo/beta-catenin-like repeat 324 363 IPR000225 GO:0005515
Cpe09g01045 525 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Cpe09g01045 525 SUPERFAMILY RING/U-box 17 107 - -
Cpe09g01045 525 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Cpe09g01045 525 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 499 - -
Cpe09g01045 525 SMART arm_5 404 447 IPR000225 GO:0005515
Cpe09g01045 525 SMART arm_5 241 282 IPR000225 GO:0005515
Cpe09g01045 525 SMART arm_5 283 323 IPR000225 GO:0005515
Cpe09g01045 525 SMART arm_5 324 364 IPR000225 GO:0005515
Cpe09g01045 525 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 295 IPR000225 GO:0005515
Cpe09g01045 525 Gene3D - 389 491 IPR011989 -
Cpe09g01045 525 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01045 Cpe-Chr9:9139986 Cpe01g00910 Cpe-Chr1:5374541 6.45E-13 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe09g01045 Cpe-Chr9:9139986 4.76E-145 wgd
Cpe13g00921 Cpe-Chr13:7813731 Cpe09g01045 Cpe-Chr9:9139986 5.86E-152 wgd
Cpe18g00826 Cpe-Chr18:7657630 Cpe09g01045 Cpe-Chr9:9139986 1.33E-171 wgd
Cpe20g00225 Cpe-Chr20:1295346 Cpe09g01045 Cpe-Chr9:9139986 0 wgd
Cpe04g01536 Cpe-Chr4:12057760 Cpe09g01045 Cpe-Chr9:9139986 1.46E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01045 - - csv:101221183 810.061