Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01047 ATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACACCACACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAACCATGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTACAGTTGGAATGGGTTTGGGGCAATTCCAAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATACGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAGGTCAAGAATGAGCCTATTGTTCTTCCAGAGTCGAAAAAAAGGGCATTTGGAACAGACGTAACGAATGTCAGTTATAAGAAAACTAAGACCGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTTAACATGCAAAAGCCAGTGCCATGCGAGAATTCATCACAAGATGACAGCCAGAACAGTCAGGATCAGGAATGTGAGCGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACGTGAAGCGAACTCACGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAATATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1143 43.13 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNMQKPVPCENSSQDDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9165627 9169261 - Cp4.1LG09g10610.1 Cpe09g01047 475413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01047 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Cpe09g01047 380 MobiDBLite consensus disorder prediction 284 307 - -
Cpe09g01047 380 MobiDBLite consensus disorder prediction 1 21 - -
Cpe09g01047 380 MobiDBLite consensus disorder prediction 1 16 - -
Cpe09g01047 380 PANTHER TRANSCRIPTION FACTOR E2F 7 372 IPR015633 GO:0000978|GO:0006357
Cpe09g01047 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Cpe09g01047 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Cpe09g01047 380 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Cpe09g01047 380 MobiDBLite consensus disorder prediction 131 148 - -
Cpe09g01047 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Cpe09g01047 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667|GO:0006355
Cpe09g01047 380 Gene3D - 149 236 IPR036388 -
Cpe09g01047 380 Gene3D - 18 91 IPR036388 -
Cpe09g01047 380 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 372 - -
Cpe09g01047 380 MobiDBLite consensus disorder prediction 106 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01047 Cpe20g00223 CCT
Cpe09g01047 Cpe18g00824 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01047 Cpe-Chr9:9165627 Cpe16g00820 Cpe-Chr16:7906566 1.68E-11 dispersed
Cpe18g00824 Cpe-Chr18:7638013 Cpe09g01047 Cpe-Chr9:9165627 9.05E-08 wgd
Cpe20g00223 Cpe-Chr20:1263022 Cpe09g01047 Cpe-Chr9:9165627 4.36E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50040 PF02319 E2F_TDP 5.10E-20 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01047 K09391 - csv:101219210 705.671